Bringing Extinct Species Back to Life | Dr. Beth Shapiro
3993 segments
So our direwolves, they have 20 edits
that we picked and we sequenced genomes
from fossil direwolves. We learned from
those genomes what genetic changes made
those animals bigger, more robust, light
colored in coat and then we engineered
those changes into a greywolf genome to
recreate the direwolf. You know, I often
get the question of why are you thinking
about bringing extinct species back to
life? Why aren't you thinking about
helping living species not become
extinct? And the answer is we are doing
both. It is the same tools. It's the
same technology. It's the same needs.
And when we excite people with the idea
of mammoths and dodos and thyloines, we
get more engagement and enthusiasm and
investment in developing the technology
that we can use to stop living species
from becoming extinct.
>> Welcome to the Huberman Lab podcast,
where we discuss science and
science-based tools for everyday life.
I'm Andrew Huberman and I'm a professor
of neurobiology and opthalmology at
Stanford School of Medicine. My guest
today is Dr. Beth Shapiro. Dr. Beth
Shapiro is an evolutionary biologist.
She was a professor at UC Santa Cruz and
an investigator with the Howard Hughes
Medical Institute before leaving to
become chief scientific officer at
Colossal Biosciences. Her work at
Colossal is focused on what is called
deextincting species such as the woolly
mammoth, the dodo bird, and the
direwolf, meaning bringing them back to
life. But that entire initiative is also
about species preservation more broadly
and how genomics can be used to improve
the global ecosystem. In this episode,
we discuss what it means to use ancient
DNA to bring back extinct species, which
then led us to a broader discussion
about genetic engineering in human
health, both of which, by the way, are
happening right now. So, this is not
just a projection into what's coming in
the future. As you'll see, Dr. Beth
Shapiro is truly a one-of-a-kind
thinker. And today, you'll learn the
science, the ethical implications, and
the positive potential of using genetics
to de-extinct species and using genetic
selection and genetic tools to change
humans. And no, Dr. Beth Shapiro is not
planning to bring back dinosaurs. And
today, you'll learn why. Before we
begin, I'd like to emphasize that this
podcast is separate from my teaching and
research roles at Stanford. It is
however part of my desire and effort to
bring zero cost to consumer information
about science and science related tools
to the general public. In keeping with
that theme, today's episode does include
sponsors. And now for my discussion with
Dr. Beth Shapiro. Dr. Beth Shapiro,
welcome.
>> Thank you.
>> Longtime fan of your work.
>> Same.
>> Love animals. Love stories about animals
that aren't around anymore. heard that
you're going to bring back the woolly
mammoths, the dodo bird, and that you
might have already done something to
contribute to the proliferation of the
blackfooted ferret. I'm a big fan of
muselids, of which ferrets are. We're
going to talk about all of that today,
including the ethical implications and
so on. But I have a very basic question,
which is how do you decide what a
species is? Because you have a degree in
zoology. I always wanted to get a degree
in zoology but a few years ago we got
this thing called DNA sequencing. We can
look at ancient DNA can look at
skeletons. People have done that for a
long time and my understanding is that
it's completely revised the
understanding of the relationship
between different animals and the number
of branches in these phoggenetic trees.
So, what have we learned that you think
people might appreciate understanding
about taxonomy and like a is my dog as a
bulldog mut [clears throat]
as a Chihuahua? Are they really the same
species?
>> Right? That's a really fascinating way
to put it. And I think the most
important thing that most people
probably don't think about is that
biology doesn't care what species you
are. Species is a a human concept. We
have this incredible proclivity to want
to put things into boxes so that we can
talk about them so that we can have
conversations or share stories or share
memories. In order to share something,
we have to know what to call it. That's
one of the reasons language has been so
fundamental to the evolution of our
species and our social structures. So,
what is a species? probably when you
learned about species in biology class
when you were in middle school you
learned about Ernst Mar's biological
species concept
>> kingdom film order genus species like
this kind of thing clay you
>> know that's the taxonomy right so we
have a lanaeus came up with this idea of
doing taxonomy right so here's an
interesting taxonomy story I've I've
spent a lot of my career working on
bison for unfortunate reasons probably
or fun reasons or whatever but a lot of
time working on bison and bison were
called buffalo buffalo right we think of
American bison as buffalo it's the same
thing the same thing but bison is the
taxonomic name that was given to
American buffalo by Carl Lanaeus because
when Europeans were going around the
world and finding for the first time
Europeans had seen all these different
animals if they saw a big animal that
looked like it would make a good coat
that was called a boof coat they called
it a buffalo or a buffalo right so we
have African buffalo buffalo, an Asian
buffalo, an American buffalo, and they
are not related to each other at all if
you look at their DNA, but they all have
the same name because they all made a
good coat at some point, or at least
there was the idea that they would. But
taxonomists found this to be very
disturbing. We want to know what animal
we're talking about when we say the
buffalo. And so this is why Carlaeus
comes up with this scheme. The American
bison, the American buffalo is called
bison bison. In fact, the plains bison
is called bison bison bison. That's a
genus and a species and a subspecies
that are all the same thing.
>> That's the Latin name bison bison bison.
>> Bison bison bison.
>> It's almost as humorous as I think it's
gorilla gorilla for the gorilla.
>> Gorilla gorilla and llama llama. That's
one of my favorites, too.
>> Love it.
>> Anyway, taxonomy. So, we have these
taxonomic ways of thinking about things
and that sorts everything into your deep
evolutionary history. But species
concepts are what people use to try to
say, okay, I have this animal. Is it in
the same species as this other animal or
a different species from this animal?
And the species concept that you
probably learned Erns May is the
biological species concept which says if
they can breed and their offspring are
fertile then they're the same species
>> which seems like a good place to start.
>> It's a good place to start
>> because even in my understanding from my
fly biologists friends is that you can't
mate Drosophila with another species of
fly and get a fertile offspring. So even
among flies, there's some restriction.
And what's wild is that flies and
mammals of all sorts seem to know. Like
they actually don't try to mate in most
cases. They don't try to mate with other
species, which is fascinating in its own
right.
>> Beg to disagree there. I mean, if you
seen your dog tries, your dog probably
tries to mate anything it comes across.
>> Just hit seven [laughter] months. I've
not seen him hump a single time. He's
still intact. This time I'm keeping my
dog intact. We can talk about the
reasons for that. Health reasons. I
might get him a vasectomy. People we
never talk about this, right? You can
keep your dog intact and just give him a
vasectomy if you don't want them to
breed.
>> Right. Yeah. Right. A guest on this
podcast said that an animal expert from
the Karolinska.
>> That makes so much sense.
>> She said, you know, in Scandinavia it's
actually she claims and I believe her
that it's illegal to neuter a male dog
unless there's a health reason. In
Scandinavia and Australia the inverse is
true. Of course they're upside down, but
we'll forgive them for that. But yeah,
they need their hormones for proper
brain development, right? and we worry
about them running around and breeding.
There is this thing called the vasectomy
which is actually less invasive a
procedure than the the full neuter.
Anyway, we don't want to digress too
much but my dog doesn't try and mate I'
I didn't see my previous dog try and
mate with cats or
>> or even Chihuahua, you know.
>> Do you think Neanderls and humans are a
different species?
>> I don't know. But I want to know if we
are all the same species. This is an
edgy topic, right? But if humans I mean
if if it's somewhat based on
nomenclature
and if there's enough genetic variation
out there is it the case that people
that we call people are actually
divergent enough in terms of their DNA
that two people are not necessarily both
homo sapiens that there's some homo
sapiens with an asterisk. I'm not trying
to cast any hierarchy. They could just
be different. So you're referring to a
different species concept which is the
genetic spec species concept where an
organism is classified based on some
threshold of sequence similarity and
that is a species concept that is as
valid and valuable a species concept as
the biological species concept which
says you can't interbreed. If you're
interested in conserving species, you
might use a geographic species concept
that says, if you live here, you're a
Florida panther. But if you live in
Texas, you're a Texas panther. We're
going to call you different species.
Biology doesn't care about your species
concept. Your species concept is
something that you have adopted to have
a conversation with another person about
a particular topic.
>> Educate us on this Neanderthal piece. I
know this is a a topic very close to
home given that your husband works on
these issues and we can maybe we'll get
him on here separately but feel free to
steal his thunder in any way that that
you feel
>> uh my husband Ed Green was part of
spontabo's group when they were
assembling the Neanderl genome and so he
spent a lot of time thinking about
Neanderl I think what's interesting from
a species concept if we start there with
what's going on with Neanderls is we now
know based on studying DNA both from
Neanderls that used to be alive and a
different lineage of human called uh
Denisven we we call it this that was
first isolated again by Swonte Pabo's
research group from a tiny little finger
bone that they found in a cave Denise of
a cave in Russia that's why they're
called Denisvens we know that there were
multiple different species or lineages
or whatever you want to call them of
humanike people that were alive at the
same time and we know that after people
moved out of Africa to colonize Europe
they met our ancestors, homo sapiens,
anatomically modern humans, everything
you want to call them. They met groups
of Neanderls and they bred with them. So
if they were a different species, they
were violating the biological species
concept at this point. So again, species
concepts are just what we make of them.
And today most people have somewhere
between 2 and 5% of their DNA that is
from this ad mixture event, this
hybridization event between anatomically
modern humans dispersing out of Africa
and the Neandertols that were already in
Europe.
>> Many questions about this. First of all,
and try not to laugh, the silhouette
diagram that we've seen of apes
gradually in sort of time sequence
working their way to bipeedal and
upright. When we see that diagram, is
that substantiated by the fossil record?
>> It is. Yes. Um, we know that the the
lineage that eventually became us
evolved in Africa. We can trace ancestry
back to apes and then to primates or
primates and then to apes and then
eventually to us. The fossil record in
Africa is very fragmentaryary. One thing
that's really been really fun about
working in ancient DNA is the field of
paleo anthropology is pretty contentious
because there are so few bones that are
out there that if someone finds a bone
and it's a partial fragment of a jaw
with a piece of a tooth in it, they can
use that bone to completely revise what
we think has happened in human
evolutionary history. And maybe they're
right and maybe they're not. And they're
smart and they've been thinking about
these things and they compare it to all
the other bones. So there's a lot there.
What's brilliant about ancient DNA is
that if I can find a little pinky bone
in a cave in Denisa, right? And I can
get DNA from that. I know that my bone
has ancestors, right? If I have a bone
that might be somewhere on that lineage
to human evolution, I don't know that
that bone has descendants. I don't know
that that bone is part of our actual
family tree or if it's another one of
the dead ends that went in a different
direction and eventually became extinct.
But that is one of the coolest things
about being able to sequence one of
these bones because now you know what it
is and now you can line it up against
all the DNA from all of the people that
are alive today and discover things like
we all have ancestry because there was
breeding between these lineages because
they could and because I think that if
they can they do.
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to save up to $200. It's interesting,
right? Because if you took the far ends
of the spectrum of the, you know, the
old world primate, you know, apes and
then the upright human walking, my
assumption is that let's just say you
used artificial insemination that you
wouldn't actually get viable
reproductively competent offspring from
those. But at some point, you know, two
different species, again, it's a
nomenclature or two, some at some some
point, but two non- genetically similar,
I don't want to say identical because
they're not twins, right? So, I don't
have a language here, forgive me, but
you can get breeding across species and
get reproductively viable offspring.
That that has to be the way this
happened, right? It couldn't have just
been through spontaneous mutations that
suddenly took animals from quadripeds to
bipeds. No, this is a very long and slow
evolutionary process. It's actually a
really good question and I think it's an
open question in evolutionary biology
and it's probably different. Evolution
does happen because of random mutations
that accumulate in a genome. And if you
think about what might happen if two
lineages are isolated from each other
for a really long time and in different
habitats, say this lineage is adapting
to the habitat that's it it's in. Maybe
it's, you know, very rainy and there's a
lot of water and there's a lot of floral
plants and over here it's drier and
there's really scrubby plants. There's
different selective environments and as
mutations arise in that genome,
different ones will go to fixation. The
size of the population also matters. If
a population is really small, even
mutations that arise that are bad can
become fixed in that population just
because the population is small and it
just happens by chance. And so over time
these two will become more and more
different from each other. So what
happens when they come back in in
contact with each other? I think it will
really depend on what those mutations
that arose over that time was. It could
be that there's a very short
evolutionary time but a mutation has
arisen that means the sperm can't
fertilize the egg or the egg can't
subdivide properly if you have a hybrid
ancestry. Or it could be that nothing
really has happened over a really long
evolutionary time and ad mixture can
happen.
>> Humans in the anderls diverged somewhere
300 to 500,000 years ago. That's not
very long ago in evolutionary time.
Brown bears and polar bears diverged
about half a million years ago. And we
know that they can readily interbreed
and do whenever they overlap in habitat.
Yeah, they're called grer bears or
pizzly bears depending on which
direction. I know they're terrible
names, right? You want a different name
for this really
>> especially if you're a bear. [laughter]
>> Yeah.
>> But that's been happening throughout
their evolutionary history. We can see
this because using ancient DNA, we were
able to go back. We found um a polar
bear off the coast of Alaska that
probably lived more than 100,000 years
ago. And it had ancestry that we see in
brown bears everywhere in the world,
suggesting that that bear's ancestors at
some point or that bear's descendants
had hybridized with brown bears and that
DNA got passed around. We know that
during the last ice age, there were
polar bears that got trapped on the ABC
islands in southeast Alaska. And when
brown bears expanded from the mainland,
they interbred with those polar bears.
And brown bears all alive in North
America today have polar bear ancestry.
That is because of that interbreeding
20,000 years ago or so.
>> Wow.
>> Yeah. So, in that case, a half a million
years had gone by. They're really
adapted to different habitats and yet
they can interbreed. But what's most
interesting and I think is relevant to
your question is that those hybrid bears
only ever live and survive as brown
bears. We see no evidence of brown bear
DNA getting into polar bears. And that
is again because of how evolution has
worked. And it's especially interesting
because it only really happens in the
direction where the mom is a polar bear
and the dad is a brown bear. Polar bears
are induced ovulators. So the presence
of a male will call them to ovulate,
cause them to ovulate. So you can
imagine situation where a brown bear
wakes up from hibernation, goes on to
polar bear habitat to scavenge for food,
comes across a polar bear female,
induces ovulation and they mate. The
other way around where a polar bear male
finds a seasonally ovulating brown bear
female probably wouldn't happen because
the timing of overlap wouldn't be right
and also he would probably kill her
rather than mate her because of the size
difference and difference in what
they're doing. So why is it then that
since bears live with their moms, all
the brown bears that we see that have
polar bear ancestry are brown bears, not
polar bears? We were working with some
polar bear biologists when we were doing
this analysis many years ago and their
hypothesis was simply that if you have
brown bear ancestry, you don't have
perfectly white fur and you cannot
successfully hunt seals. So it is just
adaptation that means that that ad
mixture doesn't work, right? So even
though there's no problem with the sperm
and egg mixing and the animal is born,
they cannot survive as polar bears and
so polar bear stays separate from brown
bear in that way.
>> I'm going to bring up dogs again, but in
the back of my mind is a conversation
about humans and this question about
different species of prior to homo
sapiens or homo sapiens and nearby
species having reproductively competent
offspring. So in the dog world, it's
well known that the English bulldog,
which has a big head, small hips, is the
byproduct of many crossings, but it's
basically the bullmastiff and the pug.
And this was an attempt to generate an
animal with a short snout so it could
clamp down for bull baiting, which
fortunately is an illegal sport now, and
to clamp down and not get shaken off by
the bull very easily.
>> Uh the floppy face is associated with
lack of pain receptor. There's a bunch
of things in the bullmastive lineage
that they want, but they wanted a low
center of gravity, so they took the pug.
But when you cross them, of course, the
females can't give birth because the
birth canal just doesn't allow for it,
>> right?
>> Humans realize this pretty quickly and
they learn cescareian section. So, I
could imagine a situation, although I
don't tend to think like this today. I'm
imagining a situation where homo sapiens
and some other non-hom homo sapien
humanish species were having sex
sometimes getting pregnant but the
babies would always die because the
birth canal and that structure of the
pelvis wasn't quite right to allow the
head size through which you know there a
lot of I hear a lot of arguments that
you know humans sort of optimized for
just enough space so that the large
humans you know we love to talk about
how big our brains are right could pass
through but no larger and and not much
smaller in most cases.
>> One of the reasons that giving birth is
one of the ways that women have died in
our evolutionary history.
>> Right. And and cesareian sections I
probably have changed human evolution in
that sense as has a aseptic you know
conditions and things like that.
>> Absolutely. For me my child was cesarian
birth. So
>> right. So, I like to think you would
have survived anyway, but the um but I
could imagine a mutation that was an
adaptive mutation where suddenly this
other species which maybe had a smaller
pelvis, a female could deliver this
child live. The the mother survived as
well and then that DNA, you know,
propagates so that there are now humans,
maybe it's been bred out, but that there
are or were humans walking around who
are not completely homo sapien or is it
not not possible? I don't know about
what's known about hip size or anything
like this, but but it is true that
humans and our archaic cousins Neanderls
interbred and that people walking around
today have Neanderl DNA.
>> 2 to 5% you said
>> two to 5%. What's interesting about that
and it touches a little bit on the
adaptation component that you you raised
is that I think most people or a lot of
people have heard this number. We have 2
to 5% Neanderl DNA. less well understood
is that it's a different 2 to 5%. Like
the 2% Neanderl that is in my genome is
different from the 2% or maybe 5%
Neanderl that's in your genome is
different than the next person.
>> So it could be heart, liver, skeleton
and uh spleen for me and it could be
some other constellation for you.
>> Could be anything. And if we were to go
around the world today and pick out all
of the pieces of Neanderl DNA that exist
in humans today, we would put together
more than 90% possibly more than 95% of
the Neanderl genome just from people who
are alive today. And that tells us that
most of the Neanderl genome was not
maladaptive for people that pretty much
all of it could get passed on and live
in healthy humans today.
>> Interesting. We don't know what happened
in the other direction, right? We we see
Neanderl bones and there hasn't really
been any evidence of humans admins with
Neanderls. There has been evidence of
hybrids between Neanderls and Denisven.
This is really one of the most exciting
things that ancient DNA has been able to
contribute, I think, to understanding
human disease and human medicine and
what it means to be human. Because
before we had the Neanderl genome, if we
wanted to know what in our DNA makes us
human, we would have to compare all the
humans that are alive today with our
closest living relative, which is a
chimpanzeee or a bonobo. So there's 3 to
5 million years of time between when we
shared a common ancestor. And a lot of
change happens in 3 to 5 million years
in your DNA. And some of it is useful
and some of it is what makes us human.
And most of it is just not. It's just
changed cuz copying errors during
copying cells and that's what happens.
That's how we're different. Every child
that's born has about a hundred
differences compared to their parents
because of copying error in the process
of making the sperm and making the eggs
that made that kids. So when we got the
Neanderl genome, that 3 million to 5
million year long branch leading to us
was shortened to 300,000 to 500,000
years by an order of magnitude. So now
if we want to know what it is that makes
us human, we have a much smaller list of
mutations or variants that we can look
at. And because we now know that 95% say
of the Neanderl genome exists in people
today, we've narrowed that list down
even further to that other 5%. What's
going on in that 5% of the genome where
no living person has Neanderl DNA? That
is where the stuff that the baby had to
have the human version in order for that
baby to survive. And that's where we
look to see what it is that made us
human.
>> A few years back when 23 and me and
these other uh companies started making
genomics in humans easier and more
affordable. A lot of guys boast about
Neanderthal DNA being vigor genes
whereas women try and downplay the
amount of Neanderthal DNA that they have
when they get their results. I found
that interesting. Is there any evidence
that the Neanderthal genes are quote
unquote vi vigor genes that they allow
for more durability of human male or
female?
>> It's an interesting question. If you
just look at that 2 to 5% of nano DNA
that we all have, most of it is not
anything that is under selection. So you
see it at about 3% frequency or so in
different populations. What is
interesting is when a piece of Neanderl
DNA is suddenly much more common in a
population of humans because that would
suggest I got some DNA from my Neanderl
ancestry and that bit of DNA suddenly
made me more fit because I had that bit
of Neanderl DNA. I was able to survive
and have more kids than everybody else
and so it increases in frequency
compared to average. And this has been a
really interesting thing to learn when
you think about Neanderl DNA. There are
a couple of things that have come out.
There are genes that are common in Latin
American populations that come from
Neanderls that predispose to type 2
diabetes. There is another gene that I
think was again in a Latin American
population that makes people feel I
can't remember if it was more pain or
less pain, but it did have to do with
pain sensation. And I remember there was
a trial of people in Colombia where they
got to feel pain in some way and there's
a Neandertol gene associated with this.
But most of the really interesting ones
have been at inimmune related genes
during the pandemic. One of the first
alals that was discovered to be
associated with negative risk or bad
outcomes of COVID was a gene that came
from Neanderls. So it's a Neandertol
derived gene that was at something like
50% frequency. So way above the 3%
average frequency in Asian populations.
And it it made people more susceptible
to the virus entering your lungs. And
presumably it only became that high
frequency because it was protective
against some other disease that was
circulating in the past. But the
trade-off of that is that it of course,
you know, made them more susceptible to
CO. There was another Neanderl
associated alil that was actually
protective against CO. So I think our
ancestors have been subjected to
different diseases and pandemics and
things that have happened throughout
life and we see the traces of that in in
ancient DNA. We can now go into
graveyards in Europe and and actually
isolate plague from dirt and from bones
from people who died of plague and look
and see how their immune systems and
genes have responded to exposure to to
things like this. It's really
fascinating.
>> Wow. My red head friends like to claim
that they have more Neanderthal and
therefore more vigor and pain
resistance. So I'm guessing the study
probably said more pain resistance. It
we have pain experts on here that verify
that indeed on average
>> that red heads tend to require more uh
anesthesia on average. So that tracks
but were neanderthalss were a lot of
them gingers.
>> Yes. This comes from studying at MC1R a
gene that's associated with the red
melanin. mammoths as well. They had I
mean you can see mammoth you can see
mammoth mummies with the actual hair and
you can see that they're kind of I don't
know if it's because they all bleached
to red, but there definitely is a um
some evidence from their genome that
they had reddish colored hair. Yes.
>> Interesting. Maybe we could just briefly
talk about eye color. Is it true that
all blue-eyed people descended from a
single blue-eyed human at one point?
This almost sounds like some eugenics
thing, but that's not why I'm asking.
Um, you also see a lot about how true
greeneyed people are are quite rare. Was
there a time when the population of
humans on Earth had a lot more greeneyed
people?
>> I think all of the colors, if you if you
look at um African populations mostly,
it's like me, dark eyes. I think that's
probably the ancestral state, but there
are lots of different eye colors that
have evolved and I think they're
selected for. I mean, people like things
that are different and unique and so
people want a mate that has blue eyes
and stuff. really think that that it was
selected for it.
>> Probably eye color was was sexual
selection. I I don't know what other
benefits blue eyes could have other than
looking very, you know, stoic and cool
as you're like trying to hunt down
something on them. [laughter]
>> Oh, geneticists are so much fun because
they're they're willing to just go
there. I was going to ask you this
question later, but I'll ask now because
it relates to what we're on to now. You
know, we tend to think of our lives in
in the time bin of our lives, you know,
roughly 100 years if we're lucky, right?
You know, at this stage of human
evolution for about 100 years, maybe 80,
maybe, you know, if we're fortunate, 90,
[clears throat] 100. But as somebody who
studies long periods of time and what's
happened to our species and other
species across long periods of time,
>> I'm always curious about this. I know
you have to make your coffee in the
morning and do every and you know manage
your life like anybody else in in the
today and in the week and in the month
and in the year but do you do you sit
back and think of all the different tens
and hundreds and thousands and millions
of years that I could focus on I'm going
to focus at this time bin right it's a
it's an interesting way to live now I'm
just curious how you pick the problems
that you choose to work on because we'll
talk about deextinction but you know why
the woolly mammoth why not like get the
Florida Panthers rebooted um completely.
Maybe why not both, right? But in terms
of just, you know, where to focus, like
why bring back things from way back when
>> as opposed to, you know, maybe we could
name a few species that uh disappeared
in the last 200 years. I'm guessing
there are
>> quite a few.
>> Yeah.
>> You know, how do you pick? And when
you're making that decision, what's
guiding it at the ethical level? What's
guiding it at the practical level? like
what what really are you trying to
accomplish? Cuz the stuff about humans
is fun place to play and put in the
backdrop. We'll return to it. But your
work's really focused on the extinction.
>> Mhm.
>> And like dinosaurs are one option.
Woolly mammoths are another. And you
know, just making sure that we don't
lose any species that we've got right
now. Also seems like a very very
important indeed noble pursuit.
>> Yes, there's that's a very complicated
set of questions there. Um, I think I'll
start with
what is motivating. And I think what's
motivating is what drives the selection
of the species. In fact, it's funny. I I
wrote a book a long time ago now called
How to Clone a Mammoth. And the first
chapter was how to pick a species. What
are you going to do? How are you going
to choose a species to bring back? And
there are technical, ethical,
ecological, and social reasons to pick
any of the species that you can.
Technical. These are the easiest, right?
We can't bring a dinosaur back to life
because we don't have dinosaur DNA. The
oldest DNA that we have ever recovered
from a bone is from a mammoth bone. A
mammoth's bone probably dates to around
1 to2 million years ago.
>> It's hard to know how old it is in that
time range because there's not a really
clean way of dating something within
that time range, but it's old. Dinosaurs
went extinct more than 66 million years
ago. So, that's far outside of where
we're going to get recoverable DNA. And
that's because the skeletons just don't
>> they're fossilized. They've turned into
rock, right? So
>> there's there's no shred of DNA left.
>> Yeah. As soon as an organism dies, the
DNA in its cells starts getting chopped
up into smaller and smaller and smaller
fragments until eventually there's
nothing left. This is really by three
processes. UV light. We know about this.
It's why we wear sunscreen when we go
outside. But the UV light hits your DNA
and it actually breaks it. And when
we're alive, we have proofreading
enzymes that will come and fix your DNA
so you don't get cancer every time you
go outside. But that is an energy
requiring process. And after you die,
there's no more energy. So the breaks
from UV accumulate. Freezing and and
thawing is water molecules expand and
will physically break the DNA fragment.
So that's bad for DNA preservation. And
most importantly, just microbial decay.
The fungi, the bacteria that get into an
organism when it's decaying. and chew it
up to transform that carbon and nitrogen
into the next generation of organisms,
right? And so that process is slower in
some environments than others. Exactly
in the same way that your sandwich will
rot faster if you leave it in the sun
versus in the shelf versus in the fridge
versus in the freezer. DNA will preserve
for longer in the cold Arctic where
things are rapidly buried in frozen dirt
and they stay that way for a million
years. like this mammoth bone that we
were able to recover DNA from. But if
you die in a very hot, wet, swampy place
like Maitius, where the dodo lived, it's
another one of the species that we're
working on at Colossal. Very little
chance you're going to be able to
recover DNA from any of the fragments
that are on Maitius Island. And I have
tried like hundreds of bones from
Maitius. We have a great dodo genome,
but it's from a bird that went to Europe
alive on a ship and is part of the
collection at the Danish Museum of
Natural History. So you have to have a
wellpreserved sample that you can get
DNA from. Ideally many of them because
you want to know what are the DNA
changes that made a mammoth a mammoth
instead of another type of elephant.
Right? So many of them will help you to
do that. But one is good enough to get
some sort of template for what you're
going to do. You probably should know
what caused that species to go extinct
in the first place so that you don't
bring something back that becomes the
first species to be deextinct. and then
the first species to be re-extinct
>> or bring back something really nasty
that knocks out a bunch of other
species.
>> Yeah, you have to understand the role
that that animal played in the ecosystem
and whether that niche is still
available. I mean, ecosystems
don't live in a vacuum just waiting for
something to come back. And in some
cases, there's a real ecological driver
for the species that we're focusing on.
We feel like there is a real ecological
role for these species to play. That
these ecosystems are destabilized
because of extinction. And by bringing
back these key ecological interactions,
we can make those ecosystems more robust
and more resilient in the face of all
the crap that people are always throwing
at our natural ecosystems.
>> Could you give me an example of of that?
So, if you were to bring back woolly
mammoths, I'm guessing that's not going
to save the Amazon forest. But what what
probably is going to do something useful
based on what you just said.
>> Yeah. So, if you think about what large
animals, large herbivores do in their
ecosystem. They turn the soil by walking
around. They knock down things.
Elephants knock down trees. Mammoths
probably lived places above trees, so
that wasn't what they were doing, but
they were distributing seeds and
nutrients. Have you heard of Pletoine
Park? This is up in northeastern
Siberia. There are these two scientists.
It's actually Sergey Zimov who's a
Russian Academy scientist and his son
Nikita. They've been running this park
up in northeastern Siberia for a long
time. And they have been really
interested in understanding what happens
when you restore all of the species that
used to live on the tundra to the tundra
ecosystem. And they have bison that
they've brought in from Canada and wild
horses and several species of deer and
muskox. and they've seen that having the
animals on the landscape that they've
fenced off actually causes the plants to
come back with more verocity. So these
animals, they have to eat during the
winter. So in order to find food, they
scrape the snow off of the surface of
the dirt. In the absence of these
animals, the snow stays on the surface
and snow is a very efficient insulator.
So, it traps the summer heat in that
frozen sediment, causes the sediment to
melt faster, and when the plants come
back, it's a particular type of plant
that can live in that moist sediment.
With the animals, you get a a mosaic
landscape where there's some parts that
are moist and and wet. there are other
parts that have been exposed and they're
dry and colder and you get broader
diversity of plants that are coming back
where these animals are. So, they are
essentially recreating their ecosystem
just by being there.
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subscription. Okay? So, you're picking,
look, you don't have to pick a species,
but you got to pick something if you
know two or three, right? I can't say
like we're going to bring back
everything from a given era. So,
>> so we did technical, ethical,
ecological. I think another answer is
what is going to make an impact right
when I joined Colossal, we didn't have a
bird program, but I really wanted there
to be a bird deextinction program
because all of the tools that we are
developing for deextinction are the same
tools that we can use to use synthetic
biology to modify the genomes of living
species and help them avoid becoming
extinct. And so the kit that we're
building from multiplex genome
engineering to cellular rejuvenation to
iPS cell technologies for wild animals
to even learning the link between
particular letters of the DNA sequence
and what those letters actually do to
cause an animal to look the way that it
does. Right? All of that is applicable
across the board. So the stack that
we're building for de-extinction for
synthetic biology stack applies to
synthetic biology for conservation. So
when I joined Colossal and there wasn't
a bird program, they had launched the
mammoth program which is a placental
mammal and the thyloine program or
Tasmanian tiger that's a marsupial
mammal. But birds are among the most
endangered species on the planet and it
is not possible to clone birds using
sematic cell nuclear transfer the
process that most famously brought us
Dolly the sheep because we don't have
access to the egg cells at the right
stage. So while that process is really
pivotal and integral to our mammoth and
thyloine and the other mamalian project,
it's just not possible to use it for
birds. And so I wanted a program that
was going to help us develop
technologies for birds. So why did we
pick the dodo compared to any other bird
for the first one?
>> Cool beak. It comes down to that which I
also think is a really important part of
talking about this project and it's the
idea of awe of being excited about
something. We get kids drawing animals
that drawing mammoths and bioines and
dodos and sending them to us all the
time. Ben has put them in frames up
around some of them are good. The dodo
with its sort of rounded top beak also
and the way the eyes are typically
drawn. It also has a kind of cartoonish
friendly toucan Sam type of look.
>> Well, it was in Alice in Wonderland.
Most of what we know about the dodo is
from cartoonish drawings of this animal.
There are some and of course there's
skeletons that we can piece together
using the many many bones in Maitius
that do not have any DNA in them based
on my very best tries.
>> You didn't choose to bring back like a
75 foot long python. Thank goodness. Oh,
but there may be virtue in doing that.
>> There might [clears throat] be. Although
I think there are plenty of pythons in
Florida Everglades right now.
>> I'm not a snake fan. No disrespect to
the snake lovers. But talk about uh bird
developmental genetics for a second. Not
to scare anyone away, but hang in there.
A few years ago, I saw something that um
two female condors can reproduce.
>> Crazy, right?
>> And this, of course, for
>> it actually wasn't two female condors
reproducing. It was one female condale
just having an egg all on her own.
>> Yeah. And because of the socopolitical
implications, this got people in well,
we're from Northern California pretty
excited. They were like, "Okay, we don't
need men after all." Right. That was the
That's always That was the You know,
>> that's funny cuz what I heard was life
finds a way. So, how did one female
condor, who we trust her when she says
that she never mated with a male condor
or a female condor, we believe her, was
able to reproduce.
>> My scientific explanation is that
meiosis didn't fully separate and she
ended up having a fertilized egg or
>> we should explain meiosis. So the
separating of the of the
>> of the cells during during the very
early phase when you're making eggs or
making sperm, you're trying to duplicate
your cell, but instead of that, you make
two versions of the cell that only have
one copy each of your [clears throat]
chromosomes. So when normally in normal
reproduction, an egg that has one copy
of the set of chromosomes and a sperm
that has one copy of the set of
chromosomes come together, they're
fertilized. The resulting eventually
embryo has two copies, one from mom and
one from dad. In this case, there was no
sperm. There was an egg that had both
copies, probably because of a mistake
during meiosis. Like, they didn't
separate out properly and that was able
to develop full term.
>> Was the offspring viable?
>> Yes.
>> What's weird about that? Yes. I mean,
it's very very cool and and um very
clear the way you described it how that
could happen because you need the two
sets of chromosomes. So, both sets came
from mom in this case and only mom. But
in humans where that happens uh and it
does happen on certain chromosomes these
homozygosity effects they happen under
certain conditions like there are these
paternal or maternal imprinted
conditions like praater willy syndrome
where paternal DNA gets kicked off and
you have two copies from mom which
doesn't sound like a bad thing unless
there are things on the paternal
chromosome that are required for
development and the reverse also happens
like in Angelman syndrome I think it is
that all the genes that everyone healthy
walking around out you and me and have
genes that only came from our mom
>> and only from dad. And so if you get two
copies from mom of a chromosome or two
copies from dad, you end up with like
pretty severe deficits in brain
development and other things
>> and some things. And you also could
never be a boy because the one gene that
turns on that cascade of male
development is called SRY. It's on the Y
chromosome. So without that gene, you
would never be a boy. You would always
be a girl. Tricomemes where you get two
copies from mom and one copy from dad.
Those can also be bad because of
different levels of gene expression
>> is down syndrome.
>> Down syndrome is tricome 21 and there
are a few other tricomemes that are
>> compatible with life. Try 21 is the most
common one because those people can live
obviously with some challenges
additional challenges because the
additional chromosome but they can live
full lives till relatively middle age.
Right? Is there a way of looking back at
the ancient DNA of different species and
knowing if they reproduce the way we
imagine they reproduce? I'm not talking
about the actual verb sex. I'm talking
about the repro like somehow sperm and
egg met but or there was something more
like the condor you were just describing
where the females were able to reproduce
through these kind of unusual
[clears throat] myiotic events.
>> Um I think because well obviously sex
has evolved a bunch of different times
on the on the animal or the tree of
life, right? And so different ways of
doing sex have evolved. So we have this
XY process where the males are what we
call the heterogimedic sex. So the males
have an X and a Y and the females have
two X's and they don't have a Y. But do
it differently. They have the WZ and
it's the the females that have the two
different chromosomes. The males that
don't. And then there are, you know,
alligators and crocodiles and they do
sex determination based on the
temperature at which the egg is sitting
during a very critical period during
development. And so,
>> yeah, there's like there are communities
online
>> I've learned that actually believe this
kind of stuff for humans. There all
these theories about how to get a male
or female offspring based on position of
intercourse, temperature, location,
food. None of it beats chance,
>> right? Um
>> or if you really want ixxie right which
is the process by which you take an egg
and you take a particular sperm
>> that you know whether it's carrying the
Y chromosome or not and use that to
fertilize the
>> can you actually determine the XX or XY
of the sperm and they can do that now
you can do it
>> you can select so you can do true sexual
selection
>> you can and it's because the Y
chromosome is teeny teeny tiny compared
to the X and so you can centrifuge them
and because they're smaller they sort
out.
>> Got it. So you can spin sperm around.
Don't do this at home. And then based on
how the different things of different
weights basically spin out to different
depths. And so you can bias the
likelihood that you'll get a XY carrying
sperm or an XX
>> caring.
>> Or you can use cloning like we are at
Colossal and like we're thinking about
in synthetic biology where you actually
know the sex because you're starting
with an actual sematic cell, a tissue
cell of that animal instead of using a
sperm and an egg.
>> So let's talk about that. And before we
do that, we should probably do a brief
developmental neurobiology lesson. You
beautifully told us what meiosis is. You
know, sperm or egg, you have 20. Well,
in humans, it's 23 chromosomes. So, you
only have half so that they can meet in
conception and then start to divide and
create more cells that become the
embryo, right? And so, in these other
species, I guess you know how many
chromosomes there are. And I must use
the woolly mammoth or the cuz it's a fun
one. Birds [clears throat] are
complicated. As a developmental
neurobiologist in my past, the bird
stuff gets tricky. Reptiles
>> birds are tricky and there's really
tricky.
>> Some birds are trickier than others. I
did not know until I joined Colossal
that there are some birds that have a
what's called a germline restricted
chromosome which doesn't exist in any of
their cells except for the germline.
>> Germ line or the sperm and eggs.
>> Sperm and eggs. And it comes into being
this chromosome just in the germ line
and then it disappears.
>> Wow.
>> I know. Biology is amazing. The birds
have these like mini mic chromosomes
that are a pain to assemble. And if
you're sequencing DNA from an extinct
species where the DNA fragments are
really short and you have to do it by
taking each one of those really short
fragments and trying to figure out where
on a whole genome it goes best on a
computer. We don't actually do it with
our with like a tweezers or anything
like that. But
>> yeah, the birds are really cool animals,
but they from reproductive biology
standpoint, it's it's tricky. So with
the woolly mammoth was a mammal.
>> Yes.
>> Right. Okay. And you know that because I
mean people can say well duh because
people normally think oh it has fur must
be a mammal but that is not necessarily
true right you have monotremes and all
this other stuff. So you know it's a
mammal because there's evidence of
lactation. How are you deeming it a
mammal
>> using its genome. So we've been able to
sequence whole genome sequences high
quality whole genome sequence sequences
from multiple mammoths that date to the
last million and a half years. And we
can assemble those genome sequences
using a computer and then we compare
them to other animals that are alive
today. And we know that the closest
living relative of a mammoth is an Asian
elephant. And in fact, mammoths and
Asian elephants are more closely related
to each other than Asian elephants are
to African elephants. So mammoths are
nested within the elephant family, most
closely related to Asian elephants.
>> Okay. Okay, so if you get this the
sequence of DNA from a mammoth, so you
know, okay, this is the complete genome.
And I think a lot of people probably
don't realize that your complete genome
is represented in most all of your
cells. There are rare exceptions. It's
just that not all those genes are
expressed, which is why you get a hair
cell versus skin cell versus heart cell
and so on.
>> That's the epigenome,
>> right? But the menu is there.
>> The menu is there.
>> Are you growing up DNA in a laboratory
that is that that is the mammoth
sequence?
>> So this is what comes, I think, from
Jurassic Park. And this is why I love
talking about Jurassic Park because I
think everybody has an idea of how we're
doing this because they saw Jurassic
Park or they've thought about this
movie. And what happened in Jurassic
Park, and I should just say it was not a
documentary, so let's not get carried
away here, right? Okay. [laughter]
What happened in Jurassic Park was
scientists found mosquitoes preserved in
amber. They stuck a needle into those
mosquitoes, preserved an animal. They
sucked out a bit of stuff that happened
to be blood and it had dinosaur DNA and
then they had the little dancing DNA
thing tells you about how they piece it
together and you can see the little
pieces of dinosaur DNA lining up next to
each other and then there's holes and
they fill in those holes with frog DNA
which was a weird choice even at the
time because we already knew that birds
are dinosaurs right so why they pick
frogs I don't know but anyway they
>> talk to Richard Harland at Berkeley or
something that's another biology joke.
Look it up.
>> But that's not actually how we're doing
this. What we're doing is somehow easier
than that. Because we know that Asian
elephants are the closest living
relative of mammoths. We also can by
sequencing a bunch of Asian elephant DNA
and sequencing a bunch of mammoth DNA.
We can see that they already have almost
exactly the same genome sequenced.
>> How similar?
>> They're about 99% similar. It depends on
how you calculate the percentage and
things like that. As a point of
reference, how similar are we to the
chimpanzees in terms of percentage
similarity of DNA
>> in that counting? It's about the same.
>> But some people might say, "We don't
look anything like chimpanzees."
>> Well,
>> 99 just sounds like so similar, like
you're going to get the same thing.
>> Yeah. Well, there I mean, people
calculate this in lots of different
ways. There's some statistic online that
we're 85% the same as a banana or
something like that. Like a lot of our
DNA is I don't know if that's true.
Right. Yeah. Is the goal to recreate the
ancient mammoth or is it to create a a
pseudo hybrid of the ancient mammoth?
>> The goal is to think about a mammoth in
terms of what it does and what it looks
like. And this gets back to this idea
that you brought up in the beginning
about a species concept. You know, this
is one of the most common things that we
hear. If you are going by a strictly
genetic species concept where you're
saying that a species an organism is
classified just by some threshold of
similarity sequence similarity to
something else. That's the only way you
can call it that thing. That isn't what
we're doing in deextinction. That's not
what anyone doing synthetic biology is
thinking about when they're designing or
engineering things to solve problems.
Engineering animals or engineering
plants to solve problems that we have in
the future. The genetic species concept
is a an idea that was proposed to
classify organisms that evolve over a
very long evolutionary bifurcating
filogenetic tree process where
accumulation of changes is over many
generations over a long time. Our
mammoths, our direwolves are not created
by that process. And so that concept
really doesn't apply. I think that's
where a lot of the the disinformation
comes. I'm going to just push back a
little bit on this because what I don't
want is for this sort of
>> definitional gatekeeping to really take
over and become the whole story. It it's
important. It's it's a question, but
it's a narrow one. And I think it crowds
out the the real discussion about what
it is that we're doing, how the
technologies that we're developing can
be applied to
>> ecosystem health to help stop species
from becoming extinct, even as synthetic
biology for for human medicine. So we're
not trying to make something that is
identical to a particular individual
that used to be alive. Our mammoths are
millions of letters of DNA code
different from each other. So even which
one to use would be an open question.
Instead, what we're doing is focusing on
where all of those mammoths are the same
as each other
>> but different from elephants. And
thinking that those places, like we were
talking about with humans, those are the
places that are important to make a
mammoth a mammoth. And that is where I'm
going to focus my energy in bringing
back a mammoth, which will be an
elephant that is capable of living in
the habitats that a mammoth lived in.
Mammoths will have to live in habitats
that exist today and tomorrow. So, the
mammoths will have to be genetically
capable of living with the pathogens and
the microbes and the food sources and
the microbiome that the elephants that
will birth them can survive in today.
When you mentioned um species
nomenclature gatekeeping, I have a
feeling this is based on the publicity
around the dire wolf.
>> Yes.
>> Okay. I just I like to just address
things very directly. I want to be very
clear. I'm not arguing for species
gatekeeping here. Uh that's not what I
do. I have I own a mut after all.
>> It's not even that. It's it's that um
somehow this idea of what we should call
it based on this very specific
definition of you can only call it this
if it's some threshold genetic
similarity is noise. It's not an
important part of the conversation. I
mean, it's a part of the conversation
and it's one that we have, but if people
don't want to call it a direwolf, just
don't, right? Like,
>> well, I think like like all things media
and Hollywood, you know, I think
Jurassic Park did an amazing service to
science and the excitement around these
concepts, but probably did a disservice
as well by embedding in people's minds
that the idea is to bring back the the
exact same animal.
>> But didn't we just say that these
dinosaurs were some dinosaur DNA and a
whole bunch of frog DNA? Nobody looks at
them and goes, "No, they're not a
dinosaur."
>> You're a scientist and I am, too.
Actually, it's funny that you you
mentioned this because my dad's a
theoretical physicist. He was involved
in chaos theory. He's been a guest on
the podcast. I remember when Jurassic
Park came out, he didn't dislike it, but
the part where he kind of rolled his
eyes was there's a description of chaos
theory in there and what it means. And
in Hollywood, they love to you use the
example of like a butterfly flaps its
wings in Patagonia and then this thing
happens in the to the barista in in
Brooklyn, you know, and people like to
bridge those concepts and they think,
"Oh, that's so cool." Like, so it's it's
it's sticky, as we say. But that's but
he he was rolling his eyes. He's like,
"Okay, that's not how these things
work." And so for people that are
experts in the area, it can be a little
bit grading at times. But the public, I
think, is open, right? in my experience
in doing what I do is that the public if
they just have the knowledge in hand and
the way you described it great. So,
>> so our direwolves, they have 20 edits
that we picked um and we we sequenced
genomes from fossil direwolves. We
learned from those genomes what genetic
changes made those animals bigger, more
robust, light colored in coat and then
we engineered those changes into a
greywolf genome to recreate the
direwolf. If it looks like a direwolf
and it's able to fill the niche of a
direwolf, I'm happy to call it a
direwolf.
>> So, the direwolf was a very interesting
choice. Clearly, you were successful in
creating this animal.
>> Sounds like you were very intentional in
picking which genes. It wasn't like, oh,
we're going to take a couple genes from
the direwolf and throw them into this
this other wolf and create what we call
as the direwolf.
>> If I were to look at the direwolf
and a you said a greywolf.
>> Yes. Side by side, is the direwolf
larger?
>> They are
>> on average at the same age. Are there
any other features that are are visibly
different or the other features more
adaptive in terms of gut and ability to
live in certain environments and this
kind of thing?
>> They're muscular. The fur is uh longer
and more full and it's also light
colored. I I think it's an important
thing to understand about how we're
selecting these because we are very
deliberate about what we're doing and
it's both because we want to with some
fidelity bring back these extinct traits
so that the animals can eventually be
released. Now, we're not planning on
rewing direwolves and we will study the
animals and learn about the effect of
their genes on their lifespan.
>> Yeah, sorry. [laughter]
But the other other animals, the
ultimate goal is to to eventually have
populations of freeling
as as they would like to. And so we we
want to understand how healthy they are,
how they're going to interact with the
habitat that's there. And we want to
make sure that because we with synthetic
biology have the power to engineer them
in a very deliberate way that we can do
that in a way that's safe. So the hair
color is a a really interesting example
of this and the strategy that we use. So
when we sequenced the genomes of the
fossil direwolves, we found that they
both had variance, the same variance in
two genes that would have made them have
light colored coats, but in living
greywolves and dogs, variance in those
genes, not the same ones that we saw in
direwolves, but close enough to where we
would need to do the edits that you have
some concern that you would have
bystander edits that might cause a
problem, can lead to oculaneous
albinism. Um, so blindness or deafness
in these dogs.
>> And we decided that because we're not
changing the whole genome, they have to
be safe on a greywolf genetic
background, we wouldn't make the trait
that way. It just wasn't passing the bar
of animal welfare safety. And so
instead, we brought back the direwolf
light colored coat using different edits
that we know are safe in a greywolf
background because there are light
colored domestic dogs and greywolves.
So, we used the edits that we know are
safe because they exist in living dogs.
>> Oh, that's cool.
>> So, we were able to engineer using all
the tools of synthetic biology, this
light colored coat that is the direwolf
light colored coat, but using a path
that we know is safe. And this is the
way that we think about all of our
projects. We have to take an Asian
elephant and turn it into a woolly
animal. That trait requires changing not
just the structure of the hair, but of
the skin itself. We have to make room
for more follicles, sebaceous glands,
different approaches to be able to
support that woolly coat, right? And we
need to be able to do that in a way that
results in a healthy animal because
these are very longived animals. Takes
22 months for gestation. They reach
sexual maturity at 14 and it's a lot of
work.
>> So, how many dire wolf wolves are
walking around right now in some
location? Right now there is Romulus and
Reheis and they are almost two years
old. And
>> male and female or male?
>> Romulus and Remis are boys and Klesia is
a girl. She is about 18 months old or
so.
>> Is the intention to mate them?
>> No, they're too closely related. We're
stopping them using hormones. So rather
than
>> But they live together.
>> They live together. She was reared by
herself. The boys had each other and she
had just her. So she's a little bit on
the like I mean you would never look at
these animals and say this is the way a
wild wolf behaved. They were hand
reared, right? Um, but she's a little
bit on the specially goofy side, but
she's the she's the best. She's
adorable.
>> Do you feel safe interacting with them?
>> Oh, no. We have interacted with them,
but the people who work with them a lot
that they know, feel safe interacting
with them, but as they got older, it was
very clear that they're wild animals.
These are not domestic dogs. Remis is a
little bit less skittish than Romulus.
He will eventually, if you sit in the
middle of where they are, he will
eventually kind of sniff around and and
maybe come near you. Romulus wants
nothing to do with you, which is funny
because they're they're identical twins,
but they're slightly different
interacting with people, but it's very
clear that they these are wild. They're
also huge, right? So,
>> yeah. How big are they?
>> I don't have the latest measurements on
how big they are. And of course, it's
seasonal for all these different things,
but I know that they were at some point
they were at least like 120 lbs, which
is big for a grey wolf.
>> Yeah. So, everything you just said about
these direwolves, would you also say
about grey wolves? Like, you wouldn't
want to be alone with one. Some can be
skittish, some can be calm. like you
>> you know I have good friends who are
somebody you should think about having
on actually that if you're interested in
dog behavior and what we've learned
about domestic dogs and I know you have
a dog and it's very exciting. Ellen
Carlson is at the Broad Institute and at
UMass and she's done a lot of work with
wolf dog hybrids and then also with
domestic dogs and trying to map genes to
behavior and all these things and
basically showed that breed stereotypes
are just not real. The that you really
can't map genes to behavior except for
Chihuahua. They're just terrible. I'm
just kidding. No, it's okay. We had
Caesar Milan on the podcast. [laughter]
He'll be the first to say that in in
almost every decade in the United
States, there was the demonized dog
breed. It was actually German Shepherds
post World War II.
>> Then it was [clears throat] Doberman's.
>> Same reason. Then it was the bulldog,
the English bulldog, which having had
English bulldog is hilarious to me.
>> I went to Georgia, so that's never going
to be my least favorite.
>> Right. Exactly. And then now it's
pitbulls. Right. And statistically,
actually, I think most bites come from
chow.
>> At least my uncle who's a vet tells me
that. But um chow owners I met some nice
chows. The blue tongue is pretty cool.
>> And that's a particular variant you can
imagine. Yeah, there's a there's color
is one of the things that's best
understood I think especially in
domestic dogs. There's so many genomes
and all these things have been mapped.
Um and that's part of what we have to do
in all these cases is is how do we
figure out what it is that causes the
thyloine to have the stripes that it has
or causes the particular types of hair
development that happen on a woolly
mammoth. These are all huge open
problems in in evolutionary biology that
I get to work on every day in my job.
>> Clearly you have clearly you have the
the the [laughter] right job. So you
have these three direwolves. They're not
mating. Is the plan to make more of them
to mate them? What's what's the ultimate
goal and intermediate goal?
>> We will have another pack so that
hopefully they will all be born more of
them at the same time so that that's the
plan eventually. It's not our priority
right now. We're working on other
species. But what we'd like to do is
have another pack in the space where we
are so we can really better understand
the impact of the animals on the
ecosystem. This is really the next
rational logical step in any
deextinction project. I often hear
rumors that what are you doing? You're
just going to take get an elephant and
uh make a mammoth and just release it
into Alaska? And you're like no. Um
first of all, no. cuz it's going to be
so hard to make that first mammoth that
I'm going to want to make sure that it
is safe and cared for and has access to
all the
>> Jurassic Park thing again. [laughter]
It's that they break out, right?
>> But also, you know, you can't do that.
We exist in the reg regulatory
environment of anywhere that these
animals are. It's it's not that we're
some crazy scientists on an island like
in Jurassic Park. You know, we we work
here. We have Ayakok protocols and um if
you're doing anything that is releasing
animal outside you're under the
regulatory purview of a whole bunch of
different agencies. I don't know if you
saw but the very first geneedited
organism created specifically for the
purposes of conservation ecosystem
restoration was deregulated by the USDA
this week. It's the American chestnut
tree. And the challenge with any of
these genetically modified organisms
that we have which we're creating
synthetic [clears throat] biology uses a
tool to make these things better. The
chestnut tree is one of these stories
like the passenger pigeon where the
American chestnut was the most prolific
tree across the eastern forests of North
America all the way through North
America until the early part of the 20th
century when a disease was introduced
believed to be on an import of a Chinese
chestnut tree that caused a fungus to
get into these trees and they all died.
But it took a decade and a billion trees
died.
>> This scares me for a variety of reasons.
A few years ago, this would be 2016, 17,
I got this strange envelope in the mail
to my residence. Do you know about this?
No, but I'm
>> So there was a So I was living in the
East Bay, California, and I get this
envelope and it contains a little kind
of like looks like a small quarter size
plastic like container just thin an
envelope and I had a little note and it
said free seeds for gardening. Oh
>> and I was like this is really odd and I
started you know fishing around on the
internet. Turns out the idea was that
massive amounts of seeds were being
shipped from China and sent here. Now,
this isn't a conspiracy, right? Like, if
you look at this, there are these this
is sort of attempt to just kind of like
put new populations of plants and maybe
it was all benevolent. And my friends,
actually, one of whom is down at Santa
Cruz. Yeah, I know some plant
biologists. They were like, "Whatever
you do, do not put that into the ground
outside because these things travel,
birds eat them, birds poop, and then
stuff gets grows. And this is how you
can decimate important populations of
trees and plants." It was the first time
I really thought about vegetation on
vegetation warfare. Is that what is
actually what was happening? Is it was
this the Chinese trying to do this? We
don't know. But what is very important
is that anytime you plant something, you
actually want to talk to the people who
understand how different ecosystems of
plants coexist in the same way that you
wouldn't put your wolves out into the,
you know, into the dog park.
>> I wouldn't put the wolves out because if
if we release direwolves, they would
compete with greywolves. And greywolves
are already having enough trouble trying
to find a way to survive. And so there's
no need there's no ecological need to
release greywolves into the habitat and
so we can use them to study these. But
if you think about what you just said,
right, I I think
>> people we as a lineage have been messing
with the evolution and of the stuff
around us for as long as we've existed,
right? Initially just by driving things
extinct. Not deliberately, right? like
just like maybe this wasn't a deliberate
attempt to
>> have some plants that would out compete
other things,
>> but we did and we changed ecosystems by
going into them and and getting rid of
all the largest animals that were there
because we were hunting them. I'm
thinking about, you know, our ancestors
in, you know, 50,000 years ago in
Australia, 30,000 years ago in Asia, and
then we domesticated things and and now
we we conserve things. And when people
think about conservation, a lot of
people have this idea that it's this
beautiful thing where you're just
leaving everything alone. But that's not
what we're doing. We are deciding how
many of them get to live, what they get
to eat. We vaccinate them. We protect
them from predators. We I'm not saying
that is bad, but I think it's naive to
say that it's not us determining what
the future of these animals are. And
we've also been moving stuff around
forever. Like we have English birds all
over the place here and in New Zealand
that were brought by people because they
liked them, right? They liked them where
they were. And I think it's a mistake to
imagine that the only good ecosystem is
the one that you know right now because
you're you're claiming a particular
slice of history as the thing that is
better than everything else. And I think
it's more important to think in terms of
robustness. And you said, well, go back
to the beginning. You you said something
about how when we have multiple things
happening, multiple species in in an
ecosystem that are all doing different
things, you end up with more
biodiversity and richer environments.
When there's an overlap in ecological
nest, there's some redundancy there. And
that redundancy is really good for that
ecosystem because it means that bad
stuff can happen and it can weather that
bad stuff.
So maybe we shouldn't always think in
terms of bringing in something new is
bad.
>> I should have planted the seeds. No, I'm
totally on board what you're saying when
I um
>> I don't mean to plant the seeds. I just
>> No, no, no, no. I'm totally totally on
board with what you're saying. It it
touches on an important theme that we've
certainly never discussed on this
podcast, but is very relevant to today's
discussion and that people should think
about, which is, you know, who gets to
decide. It's interesting because there's
both a kind of like massive ego inserted
into the notion that like we know best
about everything in including the other
all the other species of plants and
animals. That's obviously not true. But
also that we don't have anything to
contribute in terms of our own evolution
that is I mean look here you're a human
being bringing back species of past and
some people might think scary other
people might think fantastic. I think
why it's hard for people to wrap their
head around these things and they
default to thinking about oh it was
better in the past is because a most pe
people never experienced that they have
no concept. I think there's a great book
that I had to read years ago called uh
the good old days they were terrible
about we hear the good old days and you
hear about all like the dysentery the
lack of antibiotics like but we tend to
look back and say oh that was it must
have been so nice back then everything
buolic and beautiful and you forget all
the the the dark side of that
>> but the other one is that we don't have
a window into the future
>> right
>> and so you know I went to school in
Santa Barbara and one of the first
things you learn there is that there are
all these species of fox that are out on
the the Anakappa island and and Santa
Rosa Island and all these islands that
the Schumash brought out there on boats,
but no one says they don't belong there.
They say there's this incredible
biodiversity out there, which is why
it's protected, why we don't have, you
know, a lot of tourists walking around
out there. We want to protect that. But
humans brought those out. But the fact
that it was Native Americans and it was
and it was some time ago leads to our
percept like it was good, right? And so
the idea that we would remove them, no,
we need to protect them. And that makes
total sense to me, but it's a default
psychology that I think is driving a lot
of the quote unquote ethical
conversations around this because we
don't have a window into the future. So
let's say these dire wolves, you make
more of them. I can get totally on board
the idea that then they're wildlands
that they are roaming that then they're
serving other populations of animals and
plants. There's new interactions that
are that are benevolent interactions
that are pro-evolution as opposed to
devolution. I think the challenge for
people is we don't know what that looks
like and it feels like there there too
many variables to understand. So I'm
just wondering how you wrap your head
around that when you're talking to
people about what you do and and when
you're thinking about what you do.
>> I'm thinking in terms of helping
ecosystems to become more resilient. We
know, for example, because of what
happened in Yellowstone, the impact that
restoring the top predator of an
ecosystem that had been removed can
have. The grey wolves that were
reintroduced into Yellowstone, the
population of animals that they ate had
become too large and they had eaten away
at all of the shrubbery. And so putting
the greywolves back in Yellowstone
cascaded all the way down that ecosystem
ladder to changing the way the rivers
were flowing because the plants were
growing back now along the edges of the
rivers. The thyloine, which is the
Tasmanian tiger, this is the second
species that Colossal declared as one of
our de-extinction targets. Um the
thyloine was the top predator in
Tasmania. And Tasmania today has
problems because that top predator is
missing. Have you heard about or seen
the awful pictures of the Tasmanian
devil facial tumor disease?
>> Yeah, this came up um on a few podcasts
ago because we had Jared Rudder who's a
another Hughes biologist where some
mitochondria and we're talking about
they're no transmissible cancers, but
these Tasmanian devils um have wound
induced cancer-like problems. So they
fight, they scratch each other up, they
get cancers, and that that population is
suffering as a consequence.
>> And they're so closely related to each
other that they can pass them between
each other.
>> Oh, so it's the genetic similarity that
allows that to happen.
>> The point is that I Yes, this is
terrible. But if [clears throat] we had
had the top predators, those sick
individuals would have been weeded out
of that population and we might not have
this problem. So you can see restoring
that ecosystem.
And also I'll get back to, you know, I
often get the question of why are you
thinking about bringing extinct species
back to life? Why aren't you thinking
about helping living species not become
extinct? And the answer is we are doing
both. It is the same tools. It's the
same technology. It's the same needs.
And when we excite people with the idea
of mammoths and dodos and thyloines, we
get more engagement and enthusiasm and
investment in developing the technology
that we can use to stop living species
from becoming extinct. There's a really
great story. Our colossal Australia
partners have been working on a project
to try to stop the northern qual from
becoming extinct. Have you ever heard of
familiar with the qual? Most people
won't.
>> It's qu L l. So it's a little guy.
They're adorable little cute
>> carnivorous marsupials and they eat
>> amphibians. And in Australia, there is
an introduced amphibian called a cane
toad that is toxic. It's toxic to dogs.
When dogs eat them, they die. It's toxic
to everything. When a qual eats a cane
toad, it dies. And that's terrible. And
there is a very strong chance in the
next few decades the northern qual is
going to become extinct. However, there
is a synthetic biology solution to this
and it's one that has actually already
been made, right? There are mammals that
eat toxic toads that live on the other
side of the planet even that eat cane
toads, right? And they have a single
letter change that changes one amino
acid in one gene that allows them to eat
that toxic cane toad and not die. Our
Australia, Colossal Australia partners
have made those changes in a coal. And
when you measure in a dish, the ability
of that toxin to break down the cane
toad, that single letter change to that
qual's genome could allow that qual to
avoid becoming extinct, but to eat cane
toads, which currently nothing really
can in Australia. So now we can see the
real benefit of this massive comparative
biology framework. I know which gene it
is that I need to change. The stack that
allows us to develop the tools to be
able to make that change and just that
change and then show that that's the
only change that's there. You've made
what [clears throat] you wanted to do
and then put that in a living animal can
stop a species from becoming extinct.
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As someone who does a lot of public
science health education interaction, I
there there are a couple things that get
the public really worried and that they
need reassurance on. Honestly, I think
it dates back to the pandemic.
>> There's a lot of distrust about
scientists. There is this belief that
some scientists are only concerned with
themselves. M it's an important myth in
my opinion to dispel the idea that most
scientists are not what I believe them
to be which is they're trying very hard
to get answers right to do good for the
world including other species and it
they're not so careerist that they're
willing to overlook that independent of
the IRB boards and the thing that the
the constraints that force them to to do
that but that is the era we're living in
right so I think that some people think
more now in terms of you know scientists
are like doing stuff because they And
this has parallel conversations about AI
where people are think like hey like
have we really thought this one through
and people are are scared but I totally
agree with with what you're saying and I
want to talk about two species to try
and highlight this and how it can be
done right because I I think it's clear
that you're trying to do this right
[snorts] which means for the the best
possible outcomes for humans and other
species and the first are mosquitoes
>> and the second are humans. Most people
don't care about mosquitoes, but some
years ago, I started paying attention to
mosquitoes because your very own Howard
Hughes director now, I think Leslie
Bosall, works on the old factory system
of mosquitoes and other insects. And
turns out bugs find mates and find
things to suck blood from and etc. by
odors and pherommones, but odors. And so
there this idea, oh, mosquitoes have
malaria. This wasn't Leslie's idea, but
it was like, um, mosquitoes have
malaria. let's just get rid of all the
the mosquitoes,
>> right?
>> And the biologists were like, "No, you
can't do that cuz then the birds are
going to suffer cuz they eat the
mosquitoes." And on and on and on. I
mean, this stuff can really domino. And
it sounds like a great idea. It's a
terrible idea.
>> Or let's just make mosquitoes that can't
reproduce. That's a great way to do it,
right?
Or let's just do an half of them, right?
There were these ideas just kind of
thrown out there that with genetics, you
can do that. You just release a few of
these little suckers into the wild and
there is the potential that they mate
and proliferate and just enough to
eradicate a population or half a
population. It's harder to do than that.
So people didn't know this was like
being explored, but smart people put the
brakes on it. So let's talk about
mosquitoes. Like it they clearly carry
pathogens that harm people, but they're
also important for ecosystems, vitally
important for certain ecosystems. So,
how do you think about plucking out a
node in an ecosystem like a species or
introducing a a species back into an
ecosystem and thinking about the
ramifications? It's hard to model
behavior in one species, let alone
interactions between species. How do you
wrap your head around that with the
maybe the mosquito would be a I hope a
simple example of this.
>> Mosquitoes are a hard one and I think
that they do cause a lot of death and
disease, but not all mosquitoes. So the
you know only certain species of
mosquitoes carry malaria and deni and
other diseases that are known to affect
people. And also those mosquitoes have
much higher population density because
of the way that people have built our
towns than they would have had in
natural ecosystems. So for something
like a mosquito that is extremely
overpopulated and carrying a devastating
disease, I would think that there
actually is reason to think that it is
safe in an ecosystem to at least bring
that population back down to a size that
it would have been in a natural
ecosystem. A lot of problem with
mosquitoes is because people leave just
tubs of water or water that isn't
circulating out and they lay a billion
eggs and then you have many more
mosquitoes. That's not true in the
Arctic. In the Arctic there's a
bazillion mosquitoes and no people and
it's really miserable. That's uh I've
spent a lot of time in my life.
>> Yeah, I heard you describing that
elsewhere and it sounds horrible.
Someone I do not like mosquitoes. I
don't like mosquito bites. And I get it
like at first blush and like get rid of
all the mosquitoes, but it's a lot more
complicated than that.
>> Maybe engineer mosquitoes that they
can't carry the disease rather than
engineer the mosquitoes to be dead. I
mean, there are ways that I think we can
use synthetic biology and gene drives as
the thing you were getting at where you
release something that is created by a
synthetic drive into the wild and then
it passes on to the next generation. I
actually think that gene drives are an
incredibly powerful way that we have at
our fingertips where with the
appropriate safety measures and care in
place, we should think about how we
might deploy these tools. You can make a
gene drive so it only lasts for a fixed
number of generations. And also because
they tend not to make things reproduce,
there is incredibly strong natural
selection against them. Anything that
breaks a gene drive and lets something
reproduce is going to be favored in a
population, right? Um, so gene drives
are going to be difficult to get to
persist and there are many switches that
we could build into them to make them
last for a short period of time. But
there are some species that have taken
over and you talk about your plants that
you got in in this part of the world.
There's cheat grass everywhere and it's
highly flammable and it grows along the
roads and it's Mediterranean in origin.
And the only way we are ever going to
get the cheat grass down enough to be
able to let the native California
grasses come back is if we get rid of
the cheat grasses for a few generations.
And
>> do you think this is one of the reasons
there's so many fires?
>> They're very flammable and they also
don't have very um deep roots. So in
California, it's very dry, right?
California native grasses have much
deeper roots and so they stay green
longer. So they're sequestering carbon
and they're not as flammable for longer
into the season. these these shallow
rooted Mediterranean grasses dry out
super quickly. So as soon as it's fire
season like it is now, they're ready to
go, right? And it's not just here. It's
all across the western part of North
America. And this is a problem. And it's
a problem because it causes huge amounts
of damage to forest ecosystems, huge
amounts of property damage when fires
take off and they're out competing these
grasses. This is a situation where I
would say, let's think about how we
might safely deploy something like a
gene drive that can remove something or
at least tamp something down enough to
allow that ecosystem to become again
once again more robust and resilient. As
far as you know, what do we think about
adding things back into an ecosystem?
This is one of the reasons that every
de-extinction project or every species
transllocation project is staged and
thoughtful. When people moved Texas
panthers into Florida in the mid 1990s
to try to stop Florida panthers from
becoming extinct, they had developed
crooked tails and cowicks and crypt
orchidism. Their testicles didn't
descend and they were going to become
extinct. This was an inbreeding
depression. There were only a few
individuals, so they only bred with
individuals they were related to. There
was no choice. You bring in the Texas
panthers and the panthers recovered. All
of these diseases disappeared for a
short period. Now they're inbreeding
again because the population is cut off
from Texas and so they'll have to keep
doing it. We have to be the stewards of
these ecosystems that we're creating.
But that's in our power. We can do a ton
of analyses about potential risks and
rewards of what might happen when we
modify an ecosystem. And we do it all
the time. Sometimes to good ends and
sometimes to bad ends. What we can't do,
and I think this is sometimes where
the conversation gets lost, is if you
look around, we see habitats around the
planet that are suffering because of
changes that people have made. Within
those habitats, there are species that
are teetering at the edge of extinction.
And the only strategy that they have to
survive is natural selection, evolution
and natural selection. The rate of
change of these ecosystems is too fast
for that to work. If we say these
technologies that we have whether it's
transllocations or assisted reproduction
or genetic modification and synthetic
biology and deextinction
if we say that those technologies are
too risky
we are accepting the outcome of doing
nothing which is also a decision and I
think that's where a lot of times the
conversation gets lost doing nothing is
not not deciding doing nothing is saying
we accept the fact that we are going to
have a future that is less biodiverse
than the present.
>> It's amazing how people are perfectly
happy to allow the negative default
outcome to emerge even though it's the
consequence of humans but they are wary
of humans intervening to a potentially
better outcome. I think it gets back to
this issue of trust in scientists and it
also raises the question of who decides.
I'm very opinionated about this when it
comes to public health policy. I think
what the pandemic taught us regardless
of where people sat on vaccines and
lockdowns if nothing else it taught us
something absolutely essential which is
you can't have one person be the
spokesperson right
>> people need to hear from a group
including the denters in that group
>> and why they arrived at a particular
decision
>> I should be clear for all of the species
that we're working on we have advisory
panels that are built from local people
we have the Tasmanian advisory panel
that has politicians and people who grow
forests to log them and people who work
with the animals and people who are
scientists and conservation biologists
and we have regular meetings with all of
our different advisory groups to talk
about what the future might look like
well before we have a philyloine to be
able to to release anywhere. Our MOA
project is led by the Nitahu Research
Center in South Island of New Zealand.
And these Maui people are the people who
will be the long-term stewards of the
MOA. And the decision about how many to
make, which MOA to make, where to
release them, how to release them, it's
it's their decision um in consultation
with other people who will be impacted
by this. And I think that's really
important. The other thing that I think
we do well is this, right? I mean, I am
not a scientist hiding up in an ivory
tower somewhere. I'm here talking to you
and talking to as many people as I can
to tell people all about what we're we
even get yelled at for this. Why is
Colossal always talking about what
Colossal is doing? Well, would you
rather we not tell you? I mean,
>> I think the education piece is the
critical piece. I think it's great that
Colossal is doing this.
>> I mean, it is true. I I think we are all
desperate for when the direwolf story
broke and there was a small subset of
scientists who were just yelling at me
that I wasn't allowed to call it a
direwolf. And there are a bunch of
people who were like, "Wow, I can't
believe you learned from a bone and
actually use the tools of synthetic
biology to engineer extinct traits into
a living animal and now you have living
direwolves." Right? And there were
people who were scared of it and people
who loved it. And there were a bunch of
people who said the word extinction and
synthetic biology for the very first
time in their lives. And I got emails
from my colleagues at universities who
said the undergraduates were coming into
their ecology classes and their
sociology classes, their anthropology
classes. Some of them were mad and some
of them were excited, but they were
talking about it. And they were talking
about it as if they had some agency in
the world that they were inheriting. And
we hear that from middle schoolers and
high schoolers. And I think that is
really something tremendous about what
we're doing. People need to feel excited
and positive and they need to feel awe.
And when I saw the direwolves for the
first time, that's what I felt is
genuine awe, right? And there's
something about that that just makes the
world a better place. It makes people
happier and healthier. And I love that I
get to talk about it and do this hard
science, like really hard science, with
a bunch of smart people every day. As
long as we're waiting into deep water
here, let's talk about the really deep
water, uh, which is humans.
>> Okay,
>> so we have this thing called IVF
>> where people can make embryos and select
what are deemed at this point healthy
versus unhealthy. So people are doing
genetic selection in humans through
technology, right? People don't really
stop too often and think, oh yeah, you
know, how is that disrupting the human
ecosystem in any different number of
ways? But a few years back there was a a
guy in China actually who had been a
postoc at Stanford who decided to use
gene editing to modify the genome of
some babies disrupted the HIV receptor
and there are two stories about this. I
don't know which one is true. One story
is that they did it for benevolent
reasons to prevent these babies from
getting HIV from an either an infected
parent or to just protect them against
>> father was HIV positive. The other story
that was running in parallel was that
there was that this uh modification
uh might have some impact on hippocample
or other brain circuit function that
might make them hyper intelligent in one
dimension. So this was kind of more of
like a eugenics experiment. That was the
idea. And it was very interesting how
this emerged. Not in the general public,
like that was interesting in its own
right, but there was this short moment
of about a week where it wasn't clear if
this guy was going to win a Nobel Prize
and be celebrated or was going to be put
in prison.
>> Yeah, I remember this. It was Antonio
Regalado broke the story about a week
before the big crisper conference.
>> Yeah. There were these emails that
suddenly came out and and it was very
clear like people were kind of tap
dancing around this guy like what's
going to happen to him? do I want to be
associated with this and glean some of
the benefit or is he going to be
demonized in which case I want nothing
to do with this guy he's like he's he's
blacklisted and turns out it was the
latter right and the Chinese government
said yeah we're going to shut down his
lab he's going to be punished
>> I don't know what's happening if he's
running experiments or if he's in prison
or what's happening but but this was so
interesting right because since then
there's been no fewer than four major
companies launched for deep sequencing
of embryos
both from IVF but also nonIVVF babies
and I have people coming up to me
saying, "Hey, guess what?
[clears throat] We just got to screen
these embryos and we were told which of
them is going to have the highest IQ and
which of them is going to be tallest and
which of them is going to be this and
which one and that." And so some of
these companies are geared towards
ruling out disease,
>> right?
>> Others are geared towards trying to
optimize for best possible outcome.
Right
>> now, this gets people riled up because
it's very expensive at this point. So
that has other implications,
>> right?
>> And it's easy to say, oh well that's
like eugenics. But when people select
who assuming they do it voluntarily who
to have children with, they're selecting
on the basis of a number of features.
some physical, some emotional, some
resource related, some cognitive, you
know, and so
>> there's a lot of this happening happens
in the animal kingdom and in humans it's
happening now at the level of genetic
sequencing. And I think we're headed for
big discussions about ethics about
changing quote unquote ecosystems,
>> right,
>> through genetic selection of humans.
It's started. It's happening. There's a
really fascinating story that comes
partly out of ancient human DNA
literature and speaks directly to this
this idea that I think we feel
uncomfortable with things. We feel
comfortable with new technologies
initially because there's kind of this
reptile brain thing going on where first
we have to decide if we're scared of it
before we can decide if we're curious of
something, right? So there's initial
push back there. But we are doing as you
say genetic selection on humans by
choosing our mates and
it makes us uncomfortable even to think
about that. But here is a relatively
benign example to show that that's true
and it has to do with human height.
Right? So we know unlike IQ which is
very difficult to pin down which bits of
your genome mean IQ and IQ is measured
by what and what are you at and it's
different in different cultures and so
that's hard but height is relatively
easy and we know that it's heritable. So
we know that there's bits in your DNA
that can mean that you're tall or short.
I'm 5t tall, so I didn't get any of the
tall genes, right? I'm little. But we
know now by looking at the ancient human
DNA that in Europe at least where
there's a lot of very tall people in
Northern Europe, right? The the Dutch
are extremely tall. I remember going
>> going to the Netherlands and imagining
that I was going to be like speciating
there where I would be walking in
between people as they were above me,
you know, like but like driving a tiny
car where with a lot of big trucks on
the highways and anyway, that's kind of
what I feel like when I walk around in
the Netherlands.
>> The Dutch are very tall, very kind, but
very tall.
>> Very tall. But we know that a lot of
these genes were first introduced into
Europe with the step people at about
4,700 years ago at the Yam Nia and that
originally they were migrating and for a
long time we thought that people were
just getting taller because of
environment. They were learning more
about health. They're learning more
about what they should eat. And yes,
there is some truth to that. But height
in Northern Europe has kind of plateaued
now and people have reached what seems
to be the tallest you can be with this
set of genes that exist in people today.
But it is there. It's in Northern
Europe. It's it's not in other parts of
the world, right? And so there is human
genetic selection for a trait that we
can visibly see that makes people look
different from each other. That isn't
because somebody's picking an embryo and
a sperm in a dish. So we would be naive
to imagine that it doesn't happen, that
it hasn't happened throughout our
evolutionary history, or that we can
control it. But I think what offends us
about it, this innate reptilian brain
part of us, is that while we don't care
that a Chihuahua and a boxer we pick, we
engineer to have different traits
because they have different roles in the
society because we have created the
roles for them in society. We created
them. They were once greywolves. We like
to think of people as not having niches
to fill, as having some freedom of
choice, to be able to pick what they
want to do and what they want to be. And
this idea that one generation might do
something to take that away from the
next generation just sits really
uncomfortably with us. It's wonderful
that you're doing public education on
these things because I think people
really need to understand that um there
are well-meaning scientists who are not
just trying to figure out you know what
would happen if and I [snorts] think
that it's clear that there are going to
be more things like this right and so we
we have to navigate forward with that
similar to AI it's not going anywhere
just like smartphones aren't going
anywhere and and the question is what is
the best use of this the safest uses and
where can it evolve our our thinking in
our lives in really unforeseen ways in
unforeseen positive ways.
>> We're really only just beginning to see
this. I mean, you know the story of baby
KJ, the first child who was cured of a
genetic disease using the tools of
synthetic biology. This was a child that
was born with um ura cycle deficiency.
He his blood was building up in ammonia.
And because people scientists had done a
ton of research on this particular
condition and really understood a lot of
what was happening they were able to
identify the cause of this genetic
disease and then it was a collaboration
between academic industry NIH the
children's hospital Philadelphia where
he was born this huge collaboration came
together took six months designed a base
editor crisper base editor to target his
particular cells come up with a delivery
mechanism to get it into his liver, do
all of the testing that you need to do
to make sure that it's safe, and then
give him a crisper medicine, a bespoke
crisper medicine as a six-month old kid,
three times, and he is cured of this
disease and will live a normal life.
>> Amazing. And no one accuses those
doctors of playing God,
>> right? That's what's so funny. I I mean,
here I guess we're sort of exploring in
the background like what what
establishes
>> why is that not playing God in the same
way that anything is playing God? I
think we play God every day and you know
and in Judaism there's actually the idea
that you're supposed to take care of the
natural world out there. So you're
actually playing human in this case
instead of playing God when you're using
the tools available to you to actually
make the world and the people around you
better and healthier. When we took a
greywolf and decided we were going to
let its puppies live in our campsite as
hunter gatherers 30,000 years ago, we
were making a decision that impacted
another species. as we took tacente and
turned it into corn. Every decision that
we make about which populations of
species to protect and which not to
protect to decide to allow corals to
have this genetic modification so they
can survive in the habitat that we
changed by introducing cane toads. These
are all decisions we make that fall into
that category of exerting human
influence on the world. But the world
today is a human world. And the species
that live today and thrive today are
those that have figured out how best to
do that in the niches that we have
created for it. And we need to just deal
with that and get better at it. Use the
tools at our disposal.
>> Can I ask you about ferrets?
>> You can.
>> And I also want to talk about stuff that
lives underwater. That ecosystem has all
sorts of issues that it needs to deal
with. Humans probably have to intervene
really quick or we're going to be in
trouble. So ferrets, they're not rats,
they're carnivores, great binocular
vision, great hunters. But a few years
back, the blackfooted ferrets were
almost extinct. My understanding, this
might be wrong, was that it was that the
prairie dog population got out of
control when the numbers of blackfooted
ferrets were were diminished. And as a
consequence, the grasslands were being
eaten up like crazy. And that had all
sorts of downstream negative
[clears throat] consequences. So it was
important to reestablish the blackfooted
ferrets, not just cuz they're cute. And
my understanding is that it was one
ferret Scarface who sired like 300
litters [laughter] uh or more and they
were able to resuscitate or at least
partially resuscitate the population. So
I'm curious which elements of that
recollection are false and also whether
or not there's any concern about
diversity given that it was one uh one
male siring all these all these litters
since you get a bunch of kits and
they're mating. But mating of close
relatives is bad for genomes for reasons
that sort of emerged earlier is you get
homozygosity. You get genes that are too
similar and then if you have most people
dominant alals, you know, where you only
need one copy, okay, uh that's a
separate matter. But when normally many
mutations, you need two copies recessive
alals. But if you get genes that are
very similar between brother and sister,
you're likely to have two recessive
alals and you get bad mutations and
>> you can get deformities and sterilities
and low IQ. It's a very interesting
thing that throughout all species
inbreeding is bad
>> to a point. The the island foxes, the
Channel Island foxes that you talked
about, this is a really fascinating
example of a population that was so
small for such a long time and lived in
a pretty steady environment with no
predators that they went through that
bottleneck where all of those bad
mutations were expressed and purged from
the population. And they have almost
identical genomes. They have almost no
genetic diversity and they are perfectly
healthy. Wow. Now I don't know if
something happened to that habitat if
they wouldn't be able to survive because
there's no diversity of if a disease
came in they would all be susceptible
rather than some versus not.
>> And that's a very protected region. I
know that because my college girlfriend
was environmental studies major and they
used to go out there and it's very
protected. You can't just like take a
boat and like stomp around the those
islands.
>> But it's fascinating. It is fascinating.
It is fascinating. In general, my
understanding is that reading with close
relatives is bad. Really bad. Certainly
for humans, which is why in Iceland and
Scandinavia, there's these incredible
genetic records dating back to when
there were fewer foreign opportunities
to mate with pe foreigners, right? We
were going to [laughter] be blunt about
it. So, what's the deal with these
blackfooted ferrets? Because it's an
example of this a dynamic tension
between trying to reestablish a
population and wanting enough genetic
diversity.
>> Yeah. And it's also a great example of
how we can use multiple tools um that we
have for genetic rescue simultaneously
to help a species. I should say that the
Blackfooted Ferret Project is not
something that I was personally involved
with. This is a project that's been a
collaboration of US Fish and Wildlife
and the San Diego Frozen Zoo and Revive
and Restore, which is a nonprofit
conservation organization. I was on
their board for a long time and they're
doing really fun work. But the story is
interesting. The story is that the
prairie dogs, which blackfooted ferrets
eat, were a real pain in the butt for
farmers. And so they wanted to get rid
of prairie dogs. And so they set out all
these ways of just trying to kill a
whole bunch of prairie dogs. And it
killed a couple of prairie dogs, but it
killed almost all of the blackfooted
ferrets in instead. And so we ended up
with a situation where blackfooted
ferrets were nearly extinct in the wild.
People brought them into captivity, but
they could not figure out how to get
them to breed in captivity. And
eventually the last captive animal died
and then the last wild animal died and
they thought the species was extinct. It
was actually on the I think it's the
class of 1966 the first list of
endangered species when the endangered
species act first passed. Blackfooted
ferret was but then like a decade later
Shep the family dog of a family that
lived outside of Matitzi Wyoming killed
a blackfooted ferret while it was out
one night. And the the story is that the
family took it in to a taxiderermist and
they were like we want this cuz it's
kind of cool. Like what is this? And the
dude was like uh uh I'll be back. And he
went back and called somebody and was
like I think we have a you know this
extinct species here. And it was proven
that it was a blackfooted ferret. So
there was a population that persisted
around Matiti Wyoming. people started
studying this population again and they
went and they collected a whole bunch
more individuals, brought them into
captive breeding and knew more about
this. It was a real international push
to figure out how to make these animals
breed in captivity. But then they
noticed that the animals in the wild
started to get sick and in a last stitch
effort to save them, they went and
collected every individual that they
could find in the wild. And I believe
one of them was Scarface who is the one
that eventually like bred with everybody
and ended up having a bunch bunch of
diversity. scarf face. He had a scar on
his little blackfooted ferret little.
They are so cute. I recommend everyone
who's hearing this. Look them up like
pictures.
>> Don't get one as a pet. Trust me.
>> So, this is a successful captive
breeding program and every year they can
release about 500 blackfooted ferrets
into the wild. But there are two
problems. The one is what you mentioned
and that is that there's not that much
genetic diversity. There were a handful
of founders in this population. All of
them were from the same population near
Matiti, Wyoming. So they're already
closely related to each other and over
time the amount of diversity in that
population is going to decline. So a few
years ago this collaboration of
organizations got together and said
there's a solution to this. In the
frozen zoo in San Diego there are tissue
samples from that original captive
breeding population unrelated to the
individuals that were in Matiti Wyoming.
So different genetic diversity. If we
could use cloning, the tools that we
will use to make mammoth, that we used
to make our direwolves, that most
famously was used to make Dolly the
sheep, we can take those skin cells and
turn them into a living blackfooted
ferret.
>> So, revert them to stem cells.
>> Not in this case. You just take an egg
that you've harvested from another one
and you inject the cell into the egg and
the proteins in the egg itself can do
that epigenetic reprogramming, which is
kind of like reverting, but you don't
need the Yamanaka factors. just need the
egg to do this. So, it becomes a cell
that starts to divide and become all the
different types of cells that make up an
animal. So, I think in 2020, Elizabeth
Anne was born. Elizabeth Anne was the
first clone of 40-year-old tissues from
an animal that had lived decades
earlier. She was not reproductive,
unfortunately. She was never able to
have offspring
>> by behavior or there was some biological
wiring issue.
>> There was some wiring issue. Her ovaries
weren't releasing the eggs or something.
I can't remember. spirits are are have
this induced ovulation thing too. They
have a kind of funny funny I mean to us
it's funny to them it's perfectly normal
>> but they did make another one and from
the same line and that animal has
reproduced and there were offspring from
that that can be able to be introduced.
So so here we have a solution to
introducing genetic diversity into a
population that had lost genetic
diversity on the path to extinction.
But there's another problem, and that is
that the thing that's actually killing
the blackfooted ferrets in the wild is
plague.
>> Bubonic plague.
>> Plague. Yes.
>> That's another reason you don't want to
have a ferret as a pet.
>> Well, definitely not a blackfooted
ferret. [laughter] I mean, the the
European I you don't want to send me off
on a thing. I had a pet ferret leave
many years ago and I don't you were
going exactly where I'm going.
>> Domesticated ferret. It was not the It
was not the blackfooted ferret. Domestic
ferrets are not susceptible to plague
and that susceptibility must have some
genetic underpinning. So if we can
figure out what that is and there are
several hypotheses that different teams
are working on right now, we could use
the tools of synthetic biology, genetic
engineering to edit the genome of these
blackfooted ferrets and make them
resistant to plague. So, not only use
cloning, a form of genetic rescue, but
then also synthetic biology to create
animals that are able to survive in this
habitat despite that people have mucked
with that habitat in a way that makes
their survival hard. We can use these
same tools for for lots of different
things. We have a project related to our
dodo project with the maritian pink
pigeon. Another
>> is it actually pink?
>> It's pink. It's very pink. Um,
>> when you pick cool animals to wear,
you're like woolly mammoth, dodo bird,
pink pigeon. you [laughter] like you
know you guys know how to you know uh
get
>> part of part of it right dire wolf you
know [laughter] and the direwolf thing
my understanding is that it was also on
the heels of like the game of thrones
popularity so that that was like a piece
if you weren't going to make a dragon
you might as well make a very large wolf
because it has these kind of
connotations
>> when I was working on the first direwolf
genomes in way before I was involved
with colossal but the very first time we
published direwolf DNA we were desperate
to sync the publication with some editor
in some you know science journal to the
Game of Thrones coming out, we were
like, "We can get this genome done.
Surely they'll be they'll want our paper
because then they can have some press
attention to the dire paper." We never
got the DNA finished in time to do that.
It was the so poorly preserved. They
lived in warmer parts of the world and
so it was really hard to find samples
that had high quality DNA to be able to
get. It was a fun project though.
>> Were the babies cute?
>> Yes.
>> Yeah. Okay. [laughter] They didn't come
out ferocious. Yeah. No, they were
putting a plug in for them. Wolf here.
Extremely adorable.
>> Yes, I bet. Everyone loves a baby
animal.
>> Well, that's how we got dogs. I'm pretty
sure they were hanging around outside
cleaning up after us. Um, giving us a
little bit of advantage cuz if something
scary came like a giant cave bear or
something, they would howl and we would
our ancestors would know. But I'm pretty
sure that that was just commensal. We
could have lived for a long time with
them living around us and us living
around them.
>> But I think their puppies were cute.
Yeah, you make a really good point. I
mean, you know, this notion like the the
eyes of the getting rounder like in the
in dog breeds, you know, because people
like them. I mean, all the doodle
breeds, the hypoallergenic breeds, they
don't have fur.
>> I think about that sometimes cuz I have
two Labradors and so my house is
permanently coated in at least one layer
of dog shed hair fur. [laughter]
We're so comfortable as humans to uh
modify species for our immediate
convenience, but sometimes that's
obviously detrimental to entire
populations. You're talking about
reintroducing uh species that have not
been there in a long time or or
expanding their numbers. I would like to
think that with AI or other modeling
tools that you could make predictions,
not perfect, but better predictions
about, okay, let's model in the mosquito
population, the where the swamps are,
what the seasons are like, what the qual
population looks like, and you could put
you can model as many things that you're
aware of.
There's no graduate student, no matter
how brilliant, or professor, no matter
how brilliant, that can mathematically
model all the different influences of
all these different plant and animal
species. But my but AI can run it 24
hours a day, 7 days a week.
>> This idea of digital twins, can we
create a digital twin of an ecosystem
and then perturb it in lots of different
ways and see what happens. I think this
is totally within the realm of
feasibility. It's big foundational model
but I I know there are groups of people
who are working on this for for smaller
systems like individuals to think about
human medicine how what happens in this
system this particular organ system if
you perturb it in this way and using AI
to be able to narrow down the window of
what edits might be reasonable to make
and what might others I mean we're doing
other things we have a completely
independent group of people that make
what we're calling our care reports
which are deep dives into the ecosystems
where we would
releasing any future deextinct animal.
We we release these when we have them
with the blue buck. We have a blue buck
care report that people can read to
figure out what we've thought about in
terms of the impact to the ecosystem
over short, medium, and long term. And
it involves conversations with local
stakeholders and conservation biologists
and people who are thinking about it
from all sorts of different
perspectives. So, it's absolutely, as
you say, critically important to think
hard before doing things,
>> but also be willing eventually after you
understand as best you can what that
risk was.
>> Yeah. Along those lines, I predict in
probably 3 to 5 years, not 10, the
technology that we were talking about
earlier of of mutating the HIV receptor,
that sort of thing will be very common
place in the context of fertility. I
mean, if we knew a certain constellation
of disease genes inevitably led to a
disease or a high probability of disease
and there was a a way to use gene
editing to rule those out once that had
been established a number of times, I'm
willing to bet even outside the Bay Area
that people would want that. No, nobody
wants a a harder life for their child,
>> right? You know, it could also come I I
I've thought about this when my my last
book is called Life as We Made It. And
it's all about how we've been messing
with the species that we encounter for
as long as we exist. In the last
chapter, I think about how we might turn
our editing technology on ourselves. Um,
really asking the question, what is it
that will push us over that edge? Right?
>> One of the possible scenarios is that we
have a, you know, a pandemic, a crisis,
and we learn that there are certain
people who have a particular genetic
variant that means that they will die.
And suddenly the most morally
reprehensible thing that we could
imagine doing becomes the actual only
ethical solution. And that is the thing
that pushes us over the edge.
>> You mean so you're talking about more
people dying or rescuing that through a
through gene editing
>> gene editing ourselves. Yeah.
>> And now we're talking more about public
perception scientists and implementation
and and where those intersect. And I
think that one thing that I've learned
is that a lot of it is about the
delivery method. So when we hear about
gene editing and you're taking a cell
and you're putting in a dish and you're
or even Ixie what you described before
like you know um the in in a dish of you
basically injecting a sperm cell into a
into an egg as opposed to running a
sperm race right people are a little
more comfortable with that than they are
like the Ixie it's like this one we're
taking this one already because you're
biasing an outcome in a strong way right
you're not letting the system decide
>> but people are okay with this if for
example you have a man with a very low
sperm count or with very few healthy
sperm where you can take a healthy sperm
and put it in the egg.
>> Yeah. No, I think people are comfortable
with it now because it's been around for
a while.
>> It's this every new technology you have
your first is it scary like why do I
hate this before? Let me be curious.
>> Yeah. I mean in a in a different
conversation but one that is relevant.
You know, it's fortunately we're not
talking about it today, but you know, I
get asked about peptides like every 5
minutes these days. And not the peptides
of the GLP sort, but what's happened in
the health space is that the GLP drugs
have dstigmatized and taken away needle
phobia by putting the it's still a
needle, but it's on a pen. And so now
people are like, "Which peptide should I
take?" I'm like, "How do you get it?" No
one's saying like, "Is there a capsule
version anymore?" That was a big thing,
right? And now if you're like because it
turns out it's the hypodermic part, not
the needle that freaks people out. The
needle kind of freaks people out, but
people have no problem taking a pen and
going but they don't like using a
plunger and a needle, right? So now
people needle phobia has plummeted and
people are willing to explore things
that some of which there's good data on,
some of which there's like no data and
people are pinning themselves all over
the country, right? And so it turns out
that something this couldn't have been
predicted that there was this other
thing that was getting in the way. It
wasn't really the thing about taking the
the peptide that may or may not have
enough data. There are a lot of data on
the GLPS, but it really was the delivery
method. We saw this with computers,
right? They were big clunky things. You
had everyone had to use the same one.
Then all of a sudden, you turn it into a
phone that's also a camera and the next
thing you know, you kind of forget that
it's a computer, right?
>> Same thing with brain machine interface.
As long as people think you need to
drill into the skull or put something a
wire behind the ear, pretty soon this
will be non-invasive,
>> right? And then people aren't thinking
about, oh, it's going to control my
brain. So the big fear wall tends to
come down to zero through these things
that are hard to predict. And it's often
a combination of the messaging and kind
like like maybe everyone should pet a
dire wolf just once, just a little bit.
>> Would you would you like to pet a dire?
>> I would love to pet a dire especially
the little ones. But you know,
>> you should come visit us in the lab and
you'll see some of the really cool stuff
we're doing. The artificial wombs, our
really cool artificial eggs. You know,
there's a
>> you have artificial wombs.
>> We have one of
>> I realize this is going to terrify
people. I'm a biologist, but Okay, so
describe to me an artificial womb and
what that looks like.
>> Right now, we're thinking about about
mice, right? So, the idea is if we're
going to have hundreds of mammoths,
we're not going to get there by having a
hundred Asian elephants pregnant for 22
months with with mammoths. We need a way
to be able to birth multiple mammoths
simultaneously without using elephants.
Elephants should be allowed to make
elephants, right?
>> And so we'll need to build the
technology to do this. But building that
technology is also an opportunity to
build technology that can really help
people and can help other species, but
really thinking mostly about people. I
have a friend who was diagnosed with
breast cancer during her pregnancy and
she had to make a decision about not
starting the therapy until she gave
birth or taking a giant risk with the
baby. What if we could just take the
baby out and be able to put it in a
place and have it completely develop and
then she could start the treatment a
couple of months earlier? Or if a baby
needs surgery, but you can't really do
it inside, have a safe way to have that
baby come out. These are all
technologies that are will be feasible
in the future that are motivated by
deextinction. How crazy is that?
>> It is wild. One one of the most
incredible things that I've witnessed is
a a niku. It's a different form of what
you're describing, but it's incredible.
Like you go in these places and it's
room upon room and it's super quiet and
you know they try and keep it dark and
there I mean like these are artificial
wombs so to speak, right? These are so
preey babies and some of which are very
preey. Some have issues and some don't.
Some are just early which is an issue of
its own own kind. But the niku
technology has come a long long way.
It's you know far from perfect but
that's essentially what you're talking
about right?
>> Yes. a more sophisticated NICU where the
we've learned so much more because of
the complimentarity of understanding how
genes map to phenotypes and being able
to use all of the genetic resources that
are available to us from all of the
people and learning about epigenetics
and building this technology that builds
on what we understand about the
developmental process. I mean, it's a we
are facing a future that I think is
really exciting and spectacular, maybe a
little bit scary, but I think as long as
we keep talking about it and having
conversations about it way before it's
possible, we can get to a place that
people are comfortable with and people
are excited about.
>> There seems to be a theme lately in my
life where people come on this podcast
and they're talking about
revolutionizing education. We had
someone uh the principal of Alpha School
come on here. Kids spend two hours a day
on their iPad learning from an AI tutor
that knows exactly what they need to
fill every gap in their knowledge.
>> Cool. I need that
>> two hours a day. Then they go like learn
how to farm, start businesses. It was
interesting that public reaction is very
divided on that. People say great and
then other people say, "Oh yeah, but it
costs a lot so it's only for rich kids."
And it turns out they're starting
scholarship programs. And but the idea
there is to figure out the best way to
educate humans and then wick it out to
everybody. But so but there has to be
this pioneering spirit and that's always
going to stimulate concern and there's
going to be the halves and have nots
things in people's minds. I think about
your work in in a different but similar
vein where being a pioneer is hard
because you have to tolerate people
saying and and a lot sometimes the
assumption that oh you're doing this
just for your own self-interest. It's
all financially driven and what about
the you know what about the starings
that you know need our help right now.
There's always this like what about the
things that need our help right now. Why
are we doing this? And I don't have any
great solutions uh for you on [laughter]
this, but I think that public education
is clearly a big part of it. And I think
the humanizing it at the level of who's
doing it. Like it's very clear that you
love biology. It's very clear that you
like hard problems in biology. And it's
very clear that if I may, it it seems
like you ra you're not afraid of but you
rather enjoy the the fantasy positive
outcome part of it. It's not all doom
and gloom. I mean this is similar. This
example works for me. Hopefully it works
for you. You know, like Elon wants to go
to Mars and I have guests on the podcast
that say like no, he should be curing
humanity here. And and I I told that
person that's like telling you know the
Metallica they should be the Grateful
Dead. They we need individuals who are
thinking in a different way steeped in
really good ethics and are excited about
the problem to evolve this thing that we
call life on earth.
>> Sure. And I'm I'm good with that if
people say to me, "Oh, why are you
working on this? You should be curing
cancer." Those are two different
although you know there's things you
know what quit this I don't know you but
quit this and go cure cancer. Well, I
mean, we are learning things from
elephants, for example, that we have to
know about and that is actually relevant
to curing cancer, but that's not our
main I'm not focusing on curing cancer.
But people who say you should do this
instead of saving living species, I I
just really have to push back on that.
We are doing both. There is not enough
money in conservation. There just isn't.
The idea that we're developing tools
that are immediately applicable to
existing conservation problems using new
funding, new resources, bringing in new
investment ideas, excitement,
enthusiasm, excitement from students. I
mean, why why is this not embraced? Why
is it always the well, you must not be
doing that, right?
>> We are doing that. the direwolves. When
we announced the direwolves, we
announced that we had cloned red wolves,
which is the most endangered species of
wolf in North American, endemic wolf
that again is living in a very small
population, captive breeding in the
Carolinas. We had colleagues Bridget von
Halt um who works at who's at Princeton,
who had discovered a population of
coyoteike animals that have a bunch of
redwolf ancestry, some on the order of
more than 75% redwolf ancestry. And so
we've cloned these wolves as a means to
introduce new red wolf genetic diversity
into the existing red wolf population
using the same toolkit that we used to
be able to clone and generate our
direwolves.
Have you heard about our red wolves?
>> No. They were announced at the same time
though. So all these people who are like
you should be doing this instead of
this, pay attention. We are.
>> They saved the ginger wolves. I love it.
Yeah. There's something that I think
people need to understand about
scientists and probably technologists
too but that's not my uh area which is
the person matters like the person doing
the work has to be really really drawn
to almost obsessed with the project
because you could sort of ask like for
any scientist there are a lot of
scientists working on kind of pedestrian
stuff in my opinion used to review a lot
of grants for NIH and you go like eh
sometimes those will get funded
sometimes not but but that's the kind of
science that certain people do they want
to turn a crank and then there are
certain scientists who really want to be
out on that like really cutting edge and
they have to be obsessed with the
question otherwise you get nothing in
the same way that I think Elon's pretty
obsessed I don't know him but with this
going to Mars thing and I don't think he
he's got a bunch of other stuff going on
clearly but you can't really draw him
off target by saying hey why why aren't
you working on curing cancer or building
I guess he is building flying cars so
the example of musicians to me just
works like you you can't get Metallica
to play the Grateful Dead happily.
They're just not going to do it. It's
not in their spirit. It's not in their
their soul to do it that way. And so I
think that like we have to accept this
about people and the people who move
things forward. Like Howard Hughes, the
very Howard Hughes, right? He liked his
aircraft, right? He liked you. You can't
convince people like, "Oh, you should be
saving the coral reefs." Someone else
should be saving the coral reefs, but
they need to be obsessed with coral
reefs. I mean, I'm stating the obvious,
but I think from the inside I relate.
>> Yeah. Also, people shouldn't
[clears throat] feel bad about not being
able to do everything. If you think
about the amount of time that you have
in your life, if you try to do 10 things
instead of one thing, you're going to
get way less done. You're not going to
make an impact. So,
>> it's so interesting. People love to tell
other people what to do. But I will say
there are people out there, I know this
because of this podcast, there are
people out there who are enchanted by
biology, that are enchanted by what
you've told us today, that are excited
about these species and can imagine the
positive outcome. And some of them are
young and some of them are old, but God
bless the young ones because they're the
ones it only takes a few of them in a
certain area of science to really move
things forward as you know. So, where
are the public education efforts outside
of podcasting and whatnot? Like, how
many people are at Colossal?
>> There are about um 120 scientists and
then there's, you know, other other
people involved. We have a huge social
media team who put a lot of science bits
out for the world targeting different
audiences with different types of
information. We work with a lot of
podcasters and we work with other teams
of people making documentaries and
films. We publish papers using the
traditional old school peer review
process. We post some papers on the
archive if we think it's important to
get the information out faster before
peer review. So, we're trying lots of
different methods of communicating. And
of course, I go out and talk to people
and I'm a National Geographic explorer.
So, I do I take part in the National
Geographic live series. So I've gone and
just talked to communities about,
>> you know, conservation and genetic
rescue and deextinction and a future
that can be both biodiverse and filled
with people.
>> So in junior high, high school, graduate
school, were you sitting there thinking,
I'm in a department of zoology at Oxford
University, and there's a picture of
some old dude on the wall, this is what
how I felt when I went to Cambridge. I'm
like, that's Darwin's house or like
there are two ways to be in that kind of
environment. like whoa that that's so
and so and there's this history or was
it we can do this all much much better
because I get the sense that you like to
break the mold but I don't want to kind
of lead the witness here. So what were
you like as a kid and in graduate
school? Were you thinking, you know,
this this field, this whole zoologology
thing feels kind of steeped in old stuff
and I want to break it open or Yeah.
[clears throat] Like maybe just tell us
a little bit about your mindset in in uh
these kinds of
>> my origin story. I think I always
disappoint people with my science origin
story. I went to the University of
Georgia as a broadcast journalism major.
I had worked for the local TV station in
the corner of Northwest Georgia where I
grew up. I was on air
>> in the mornings. I did local cutins on
headline news at 24 and 54 after the
hour. When I went to the University of
Georgia, I was actually the news
director of a local radio station that
was there, which was not particularly
well aligned with being a freshman at
the University of Georgia. We'll just
say I was living in a dorm that had a
shared bathroom and we would I had to be
at work at 4:00 in the morning to write
and cut the news so I could be on the
drive time show. Do you remember these
from the '9s? Like the
>> Yeah. So, I had an opportunity to take a
class after my freshman year and it was
an honors program class and it was
geology and archaeology and it was a
nine-week class and we started off on
the east coast and learned about
minerals, identifying minerals and and
the sort of coastal dynamics on the
coast. drove across the country,
sleeping in national parks, drove up the
west coast, drove back across the
country and learned about the formation
of the national parks, the landscape
that is the US, right? And I thought to
myself as I was watching this, you could
see the scars on the landscape from
glaciers and we went to all of these
archaeological sites and anthropological
sites and saw the impact of people on
the ecosystem and the impact that we had
on those people. And I thought, this is
the kind of story that I want to tell.
Maybe I want to be a science journalist
instead of just a regular journalist.
The idiocy of people who think they're
an expert because they've done something
for a few years. I was like, I already
know how to be a journalist. I'll just
learn how to be a scientist, right? And
so I started taking science classes. I
ended up going to Panama, living on a
place called Barrow, Colorado Island,
and studying parasettoid wasps and
wasn't doing anything related to
genetics or really evolution. and it was
ecology, population ecology. And I met
somebody there who was starting up a lab
in Edinburgh. And [snorts] I thought he
was really smart and interesting. We put
together this proposal of a a project
that I could do as a PhD student where
we were going to study the type of wasp
that switches back and forth between
inbreeding and outbreeding. So the
question was, is the switch to
inbreeding something that is intended to
purge your genome of those delletterious
alals like the Channel Island foxes?
like if we inbreed, we'll get rid of all
that bad stuff that's accumulated. Then
we can go back to outreing.
>> It's a pressure test.
>> Yeah. So, we designed this experiment. I
went back to the University of Georgia.
I was like, I'm going to go to
Edinburgh. This is going to be great.
Help me apply for these scholarships.
And they said, cool. Because I couldn't
afford to go, you know, overseas for
grad school. And I said, cool. You can
you can apply, but you have to apply for
all of the scholarships that we have for
our honors program people together
because it's just one big package. So, I
applied for the Marshall scholarship to
go to Edinburgh
>> and the roads. And I did not get a first
round interview for the Marshall. So
ended up not obviously being able to go
to Edinburgh, but I got a road
scholarship. So I ended up at Oxford.
>> So you are a true I think you're our
first road scholar, you know. [laughter]
>> So I got a roads I ended up at Oxford. I
had no idea what I wanted to do or who I
was going to work with. And I met on my
first few days there this guy called
Alan Cooper who was a Kiwi. He was
setting up an ancient DNA lab. This was
one of the few labs at the time that was
going to be built to be able to process
these old samples. And I was really
excited about the idea of ancient DNA
because it brought together geology and
paleontology and storytelling. If I'm
reading DNA sequences from entire
ecosystems that used to be alive, I can
tell a story about how the environment
changed when people first arrived or or
how the environment changed with rapid
warming out of the last ice age. And I
was like, "This is the science I want to
do." Plus, it was brand new. Nobody was
doing it. There were a couple of
dinosaur DNA papers that had been
published and proven to be false. And it
was really an opportunity to bring stuff
together that hadn't been done before
and just do something entirely new. and
he told me that if I joined his lab I
could go to Siberia and that was enough
for me. I signed on the line. I was like
I'm in. So that's my origin story and I
think it is because it was new because
it was an opportunity to bring together
lots of different disciplines that you
know otherwise really hadn't been
thought of together. I got into
deextinction because everyone who works
in ancient DNA is asked as the first
question whenever they publish a paper.
This is you're working in ancient DNA.
We're doing stuff that's high-profile.
We get high-profile papers. It's it's
normal in science for this thing to
happen. You get interviewed by somebody
from the media and the first thing they
want to know is, "So, what does this
mean about how close we are to bringing
dinosaurs back to life?" Every time.
Every time.
>> I'm more concerned about the blackfooted
ferrets. Frankly, [laughter]
>> when I was researching my my second
book, I was using the New York Times
Wayback Machine, which is amazing. Love
the Wayback Machine. And [snorts] I was
reading the very first article about the
very first ancient DNA publication in
1984. Researchers from Berkeley in what
was called the extinct species study
group had managed to isolate using
molecular cloning because this was precr
days
>> a tiny little fragment of DNA from the
skin of a preserved quaga which is an
extinct type of zebra
>> and show that it was related to a zebra.
So the scientific finding was not that
illuminating, but the fact that DNA
survived after death, this was the first
discovery of that. So it was a big deal.
It really set off all of the the stuff
that became the dinosaur DNA days of
ancient DNA. The
>> lead to forensics in
>> all of the forensic stuff. Yeah. All
that came came out of this, too. But
when the journalist interviewed Alan
Wilson as the very first ancient DNA
researcher, publishing the very first
ancient DNA paper, he got to be the
first person to ask
>> the dinosaur question.
>> The dinosaur question. Yes.
>> I mean, it is true that if you walk into
the life sciences building at Berkeley,
there's a T- fullsize T-Rex skeleton
there. It's very cool. People love the
I've never been dinosaur obsessed. I I
can think of many more animals and human
diseases that to me are more
interesting, but this is like the why
don't you cure cancer thing. So,
>> yes. Well, but I think we get to mammoth
because as soon as people hear that and
understand that we can't have dinosaurs
because there's no dinosaur DNA, they
they tend to settle on mammoth. Either
mammoth or saber-tooth cat. Those are
the two things that that we get after
that. But I think it's just because
they're big, you know, it's it's this
big thing. We know they're extinct
because our ancestors hunted them.
>> We know they're relatively recent. We
can imagine what they looked like.
They're in popular culture a bit. And so
it's a matter of of awe of interest. I
think it's the size and scope that is uh
they make us feel small and
>> people don't like to feel small but
mammoths make us feel small too I think
but in a way that we we can appreciate
>> yeah there's something about the
psychology around this in terms of
public perception and the dinosaur thing
I'm going to go with that people want
the best for our species and other
species on average they're a little
scared based on for reasons that make
perfect sense to me based on what they
know and and what they don't know for
that reason and many other reasons I'm
just grateful that you'd come out here
and talk about this stuff today and that
you're doing what you do. I thought the
direwolf thing was super cool. I still
do.
>> You should come see them.
>> I got it. I'm not saying that I'm, you
know, I, as a biologist, I got it. As a,
you know, developmental biology, I was
like, I got it. This is not like taking
some human cells from the cortex and
putting them into a mouse cortex. Like
those are cutesy experiments. Frankly, I
thought those experiments were more like
cutesy derivative. They didn't really
inform or anything in my opinion. But
what you guys did, I thought was really
cool. And then as I started learning
more about what you're trying to
accomplish, like repair ecosystems, make
better ecosystems, I'm all for progress.
So, thank you for doing what you do, for
continuing to do what you do. I didn't
even get into the fact that you walked
away from a fully thriving lab in
academia, Howard News Investigator,
which is this thing that very few
attain. and so to do this. So clearly
you're on a mission and I I have every
anticipation that it's going to work out
and work out for the best for animals
and for people. I'm excited to see what
you guys do.
>> Thank you for the opportunity
[clears throat] to have this
conversation.
>> Yeah, it's a lot of fun for me. I rarely
can I talk about ferrets, woolly
mammoths, dinosaurs, and uh human gene
editing all in one conversation. Thanks
so much.
>> Thank you.
>> Appreciate you. Thank you for joining me
for today's discussion with Dr. Beth
Shapiro. To learn more about her work,
please see the links in the show notes
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dopamine, deliberate cold exposure. We
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In this episode, Dr. Beth Shapiro, an evolutionary biologist and Chief Scientific Officer at Colossal Biosciences, discusses the complex field of de-extinction. She explains how genomic tools are used to re-engineer extinct traits into living relatives—such as creating 'direwolves' by editing grey wolf genomes—not just to bring back iconic species, but to restore ecosystem health and develop conservation technologies. Dr. Shapiro also addresses the ethical and scientific nuances of species classification, hybridization, and the broader implications of genetic engineering for both animal conservation and human health, emphasizing the goal of building resilient ecosystems rather than merely creating biological identicals.
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